Gene detail

Gene detail information of Glyur000970s00028369

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28740.1	8.00E-99
NR	XP_007140693.1	1.23E-180	hypothetical protein PHAVU_008G133800g [Phaseolus vulgaris]
Swissprot	tr\|Q9SRY4\|LPA1_ARATH	1.00E-27	Protein LOW PSII ACCUMULATION 1, chloroplastic (Precursor)
trEMBL	tr\|V7B477\|V7B477_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12687.1}

Sequence

Transcript Sequence

>Glyur000970s00028369.1
CAATACCANAATCATCCAAATAAGGAGAGATAGGTAGTTAAGTTTTCACCTTTGCGCATGGCAAACTGAAACNGAAACTGAAACCAAACCAAACCAAACCATGGCGTTAGCGTTGGGTTCTCCAAACTCCAACACTTTGCAACATCTCACTCTCCCAACAGTAACACAACCACTCCATCTTCTCATCCGCAATCATCGTACCAGTTTCATGTTCAGTGGCCGAGGTGTCAGCTATGGTCACACTCCGTTCTTTTCAGACCAAAGAGCTTCTGTTGCCACTATTCTCTGTTCCGCTTCCAATAAACCATCNTCTTCCTCTGAAATTAGCTCTACAGCCAGGATAAGGAGCGAGGTTCTCTCTCCGTTTCGGTCCCTTAGGATGTTCTTTTATATTGCTTTTGTTGCAAGTGGTTCTCTTGGGGGACTCATAGCAACATCACAACTGATTGGTGCACTGGCTAATCCATCAAGAGCATCTCAAGTCCCTGAGATTGCAAAGGGACTNGGCATTGACATTGGAGCAGTGTCTTTATTTGCTTTCCTGTACTTTAGAGAGAACAAAGCCAAGAATGCACAAGTGGCNCGGCTCTCAAGAGAGGAAGTCTTATCGAATCTTAAGCTCCGCGTGAGCGAGAAGAAGATCATTCCTGTTAGCTCACTGAGAGGGATTGCTCGTCTTGTCATCTGCGCTGGCCCGGCATCCTTCATAACCGAGTCCTTTAAGCGCAGNGAGCCTTTCACCGAAAGCCTTTTGGACAGAGGAGTTCTTGTTGTGCCCTTTGTAACAGATGGAAATTCACTTGCTTTGGAGTTTGAGGAGACCGAGGAGGAGGTGAAGCAGCAGCTTGTCACCAGAAAGAAGAGACTCTGGCAGCTGGCTCCGGTTTACATCAATGAGTGGTCCGAGTANGTCTATGAGGCGGATAGAAAGTGGCTAAATGAACAAAAGAAGTTGGCAGGTGTATCCTCNGAGTCTCCAGTGTATTTATCTCTACGCTTGGATGGTCGTGTTCGCGGCAGTGGCGTTGGTTATCCTCCTTGGAATGCTTTGGTTGCACAATTACCACCAGTAAAGGGAATCTGGACTGGCCTACTAGATGGCATGGATGGTAGAGTTCTTTAGAATCTAGAAGTGTTTTCTTCTTTTTTCTTTTTCTGCATTTGGTTTTGTTTCCCTATAGTGGATATCCCATCACACTTTTATTGCACTTTTATGAATTAAATTGTTTATAAGGTAATGTTTAGCTATCTTTAGTGGGTATTGGCTCAACTGAGAATTGTTGATATTCTTCTTTCTTTCTTTTTCTGTTTTTGCAAGATAACTGTTGATATTTCTGTATTAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00970	83797	87256	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000970s00028369.1	PF11998.3	DUF3493	74	154	1.60E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.104
SRR1783600	control	0.099
SRR1783602	moderate drought stress	0.056
SRR1811619	moderate drought stress	0.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.045
DRR006520	Root Summer glycyrrhizin high producing strain	0.958
DRR006521	Root Winter glycyrrhizin high producing strain	0.658
DRR006522	Root Winter glycyrrhizin high producing strain	0.727
DRR006523	Root Summer glycyrrhizin low producing strain	0.817
DRR006524	Root Summer glycyrrhizin low producing strain	0.739
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.139

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.559
SRR2868004	Drought Stress (root)	5.047
SRR2967015	Control (root)	3.959

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.265
SRR9715740	Leaf	43.350
SRR9715741	Leaf	20.163
SRR9715739	Root	0.000
SRR9715742	Root	1.680
SRR9715743	Root	1.100

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.759
SRR8749028	MeJA induced 9h	0.590
SRR8749029	MeJA induced 9h	0.407
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.056
SRR8749032	Uninduced	0.422

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.891
SRR8400027	Control - Root	1.605