Gene detail information of Glyur000970s00028368 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20260.1 | 5.00E-25 | photosystem I subunit E-2 |
| NR | ACJ84185.1 | 1.49E-56 | unknown [Medicago truncatula] |
| Swissprot | tr|Q41228|PSAEA_NICSY | 1.00E-45 | Photosystem I reaction center subunit IV A isoform 2 (Precursor) |
| trEMBL | tr|B7FHF6|B7FHF6_MEDTR | 6.00E-57 | Uncharacterized protein {ECO:0000313|EMBL:AFK46371.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00970 | 80421 | 82026 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000970s00028368.1 | PF02427.12 | PSI_PsaE | 86 | 146 | 3.70E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.082 |
| SRR1783600 | control | 0.073 |
| SRR1783602 | moderate drought stress | 0.086 |
| SRR1811619 | moderate drought stress | 0.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.877 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.797 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.250 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.491 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.999 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.722 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2396.319 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2364.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.904 |
| SRR2868004 | Drought Stress (root) | 33.654 |
| SRR2967015 | Control (root) | 22.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1183.387 |
| SRR9715740 | Leaf | 1025.770 |
| SRR9715741 | Leaf | 951.035 |
| SRR9715739 | Root | 0.103 |
| SRR9715742 | Root | 2.897 |
| SRR9715743 | Root | 2.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.008 |
| SRR8749028 | MeJA induced 9h | 44.950 |
| SRR8749029 | MeJA induced 9h | 21.666 |
| SRR8749030 | Uninduced | 43.541 |
| SRR8749031 | Uninduced | 7.192 |
| SRR8749032 | Uninduced | 31.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.304 |
| SRR8400027 | Control - Root | 21.708 |