Gene detail information of Glyur000970s00028359 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20230.1 | 8.00E-53 | Tetraspanin family protein |
| NR | KEH42419.1 | 5.91E-123 | tetraspanin family protein [Medicago truncatula] |
| Swissprot | tr|Q93XY5|TET18_ARATH | 8.00E-76 | Tetraspanin-18 |
| trEMBL | tr|A0A072VK97|A0A072VK97_MEDTR | 2.00E-123 | Tetraspanin family protein {ECO:0000313|EMBL:KEH42419.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00970 | 22578 | 27008 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000970s00028359.1 | PF00335.15 | Tetraspannin | 11 | 115 | 4.50E-10 |
| Glyur000970s00028359.2 | PF00335.15 | Tetraspannin | 11 | 115 | 4.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.992 |
| SRR1783600 | control | 42.725 |
| SRR1783602 | moderate drought stress | 34.645 |
| SRR1811619 | moderate drought stress | 34.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.778 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.852 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.382 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.423 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.962 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.928 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.983 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.740 |
| SRR2868004 | Drought Stress (root) | 43.379 |
| SRR2967015 | Control (root) | 44.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.384 |
| SRR9715740 | Leaf | 18.478 |
| SRR9715741 | Leaf | 19.429 |
| SRR9715739 | Root | 28.420 |
| SRR9715742 | Root | 25.240 |
| SRR9715743 | Root | 21.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.285 |
| SRR8749028 | MeJA induced 9h | 16.995 |
| SRR8749029 | MeJA induced 9h | 14.839 |
| SRR8749030 | Uninduced | 7.906 |
| SRR8749031 | Uninduced | 9.315 |
| SRR8749032 | Uninduced | 9.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.638 |
| SRR8400027 | Control - Root | 40.271 |