Gene detail

Gene detail information of Glyur000969s00032276.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18990.1	9.00E-29	AP2/B3-like transcriptional factor family protein
NR	XP_003551329.1	1.27E-124	PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max]
Swissprot	tr\|Q8L3W1\|VRN1_ARATH	5.00E-32	B3 domain-containing transcription factor VRN1
trEMBL	tr\|K7MSG4\|K7MSG4_SOYBN	5.00E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G30790.1}

Sequence

Transcript Sequence

>Glyur000969s00032276.1
ATGGCTAATGAGTTTCCTCACGAGCCTTCGGTGAAGCCATCCCACTTTTTCAAGATCATCCCTGGTCAAAGCCTTCATGATGGAAAGCTTATGNTCCCAAGAAAGTTNGTGGAGAAATATGGAGNAGGCTTACCAAACACTATATTGCTTAAGCCTCCAAATGGTGATGAATGGAAAATAAATTTGGTAAAACGTGATGGCAAGATATGGTTTCAAAAGGGTTGGAAAGAATTTGCTAAGTATCACTCTCTAGCTCATGGGCATCTTCTGGTTTTTAGATACAAAGGAACTTCTCATATTCAGGTACACATATTTGATACGAGTGCCTTAGAGATAAAGTACCCTTTCAGAAGAGTAGAAGCTAAAAGGGCCTCCAATGGTCAAGGAAATAAACCTCCAAATGATGAAAAATCTGAAGATTACAGAGCAGGCCAGAAGAGAAAAGCTAACACATCATTAGAATTTCTTCAACCATTTGAAACTGGAAGCAGTAGAGGTGTCAAAGTTGGGAACACCTTGAAATTGAAAAAGGAAGCTTTGCATAATACTGGCAGAAAGTGCAAAGCTAACTCGTCATTAGAATTTCTTCAACCATGTGAAAAGGGAAGCAGATGTGTTGAAGTTGGGAATACCTTGAAATTGCAAAAGGTAGCTTTACATCATACTAACAGGAAGTGCAAAGGAAAACAAATTATTACTGCCAAGAAAGTTGCAGCTCTTGACAGAGCAAGCTCTTTCAAAGCTTGTAATCCATCCTTCCTTGTTGTCATGCATCGATCATACAATTTACCATATGGATTTGGTAAGAGACACTTAGATTTGGGCAAGAAAGGGGGAGATATTCAACTTAGAGTGTTAAATGGGGAAGTTTGGCCTGCAAGGTACTGTATCTGGAAAGACAACACAAGAACAAAATTTGAGCTCTCAGGAGGATGGAAGGCATTTGTAAAAGGCAATAACTTGAAAGTTGGTGATGTTTGCACCTTTGAGCTCATTCCTGGGACTAAACTCACCTTCCAGGTTCACATCTTTAGGGAGACAGATAATTCNACTTGTCTAACATCTCAAGGTAGGATTGATGTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00969	99200	101985	-

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000969s00032276.1	PF02362.16	B3	17	107	5.30E-14
Glyur000969s00032276.1	PF02362.16	B3	261	346	1.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.040
SRR1783600	control	0.020
SRR1783602	moderate drought stress	0.014
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.082
DRR006524	Root Summer glycyrrhizin low producing strain	0.010
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.019
SRR2868004	Drought Stress (root)	0.042
SRR2967015	Control (root)	0.052

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.114
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.025
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.013

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.160
SRR8400027	Control - Root	0.119