Gene detail

Gene detail information of Glyur000969s00032266.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05490.1	2.00E-91	chromatin remodeling 31
NR	XP_007140762.1	6.12E-156	hypothetical protein PHAVU_008G139700g [Phaseolus vulgaris]
COG	YP_001181346.1	2.00E-19	helicase domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|F4I8S3\|CLSY3_ARATH	8.00E-103	SNF2 domain-containing protein CLASSY 3
trEMBL	tr\|V7B8F7\|V7B8F7_PHAVU	2.00E-156	Uncharacterized protein {ECO:0000313\|EMBL:ESW12756.1}

Sequence

Transcript Sequence

>Glyur000969s00032266.1
ATGGTAAAACCTTCTTTTCCGAACATGATATCGCCGGAACTGAAGAAGTTTTGCCAGAACAGACTAATGCAAGAAAGAAAAGCATCTAAGGAAGTGTCTTGGGAGCCTGTTTCTTCTNGAAATCCTGCTGATGACAAGATAAATCAGTTGAAGTCTCTGACGGACTCTTTTGTTCATGTTCACAAGAGAAGCATCCTCTGGAAAAACCTTCATGGGTTGAGGGANTGCGTGCTTGTTTTAAAGCCAGACAGTTTGCAGAGAGAGATCCTAGAGAGCATTGAGTGTTCTCAGAACACATCGAACTTTGAACACAAGCTGACTTTGGTGTCTGTCCATCCATCCCTTTTCCTCCANTGCCCTCTTTCAGAAAAGGAAGAATCTTTAATTGACAAGGAACAGTTGGAAAAGCTTAGATTGAACCCCTATGGAGGTGTCAAAACCAGATTTCTGGTGGAGTTTATCAGGCTATATGATACATTAAATGAGAAAGTTCTTGTTTTTAGCCAATTCAAACATCCTTTGGATTTGATCATAGACCAACTCAAGTCAGTTTTCAATTGGTCTAAGGGGAAGGAAGTTTTGTTAATGCGTGGCAACCTTGACCAACAGCATAAGCANTTCCTGATTCATCGCTTCAATGGTGCGAATAGCCAAGCAAAGATAATGCTTGCATCCACAAAGGCATGCTCTNAGAGGATCAACTTGGTTGGAGCCTCAAGGGTTGTGCTGCTGGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATATGCCGCGCATACAGGCTTGGACAAACGAGAGNTGTTTATGCATACCATTTCCTCACTCAAGGGACCATTGAATGCACAAAGTATTGTAAACANACCAAAAAGGACCGGTTATCTGAANTGGTTTTCTCAGCTAGGAACTCTGAGAAAGATATTAAGCCAAGGAGTTGTGAAGTAGATCTTGAGGACAAAGTTCTTGATGTGATGGCTNGGCATGACAAACTCAAGGACATGTTTGGTGAATGTGTAGTCCAGNCAAAGGAGAGAGAATTGCTTGAGGGTTTTGGCTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00969	20625	21686	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10875	RAD54L, RAD54	EC:3.6.4.-	Homologous recombination	map03440

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000969s00032266.1	PF00271.26	Helicase_C	189	264	3.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.034
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.190
SRR1811619	moderate drought stress	0.176

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.100
DRR006520	Root Summer glycyrrhizin high producing strain	0.101
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.315
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.263

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.001

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.725
SRR9715740	Leaf	6.543
SRR9715741	Leaf	1.253
SRR9715739	Root	0.047
SRR9715742	Root	1.185
SRR9715743	Root	0.676

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.029
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.054

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.160
SRR8400027	Control - Root	0.206