Gene detail information of Glyur000967s00032382 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14455.1 | 5.00E-40 | Target SNARE coiled-coil domain protein |
| NR | AFK35381.1 | 1.66E-74 | unknown [Medicago truncatula] |
| Swissprot | tr|Q94CG2|BET12_ARATH | 7.00E-54 | Bet1-like SNARE 1-2 |
| trEMBL | tr|I3S539|I3S539_MEDTR | 6.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:AFK35381.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00967 | 75983 | 79926 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000967s00032382.1 | PF05739.14 | SNARE | 61 | 121 | 2.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.320 |
| SRR1783600 | control | 3.416 |
| SRR1783602 | moderate drought stress | 3.631 |
| SRR1811619 | moderate drought stress | 3.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.131 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.893 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.568 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.991 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.651 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.932 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.509 |
| SRR2868004 | Drought Stress (root) | 11.249 |
| SRR2967015 | Control (root) | 10.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.102 |
| SRR9715740 | Leaf | 3.095 |
| SRR9715741 | Leaf | 2.897 |
| SRR9715739 | Root | 3.548 |
| SRR9715742 | Root | 3.775 |
| SRR9715743 | Root | 3.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.998 |
| SRR8749028 | MeJA induced 9h | 11.456 |
| SRR8749029 | MeJA induced 9h | 13.076 |
| SRR8749030 | Uninduced | 8.631 |
| SRR8749031 | Uninduced | 6.381 |
| SRR8749032 | Uninduced | 6.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.344 |
| SRR8400027 | Control - Root | 14.216 |