Gene detail information of Glyur000966s00025854 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63530.2 | 5.00E-42 | RING/U-box superfamily protein |
| NR | XP_006591894.1 | 1.30E-159 | PREDICTED: uncharacterized protein LOC100805963 isoform X1 [Glycine max] |
| Swissprot | tr|Q8L649|BB_ARATH | 3.00E-50 | E3 ubiquitin ligase BIG BROTHER |
| trEMBL | tr|I1LQI9|I1LQI9_SOYBN | 5.00E-160 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G06090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00966 | 92823 | 97882 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.032 |
| SRR1783600 | control | 18.275 |
| SRR1783602 | moderate drought stress | 13.970 |
| SRR1811619 | moderate drought stress | 13.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.628 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.388 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.982 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.619 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.051 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.748 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 54.695 |
| SRR2868004 | Drought Stress (root) | 32.219 |
| SRR2967015 | Control (root) | 32.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.596 |
| SRR9715740 | Leaf | 5.358 |
| SRR9715741 | Leaf | 7.579 |
| SRR9715739 | Root | 7.054 |
| SRR9715742 | Root | 11.106 |
| SRR9715743 | Root | 9.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 60.676 |
| SRR8749028 | MeJA induced 9h | 22.819 |
| SRR8749029 | MeJA induced 9h | 37.060 |
| SRR8749030 | Uninduced | 17.440 |
| SRR8749031 | Uninduced | 10.933 |
| SRR8749032 | Uninduced | 8.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 57.339 |
| SRR8400027 | Control - Root | 62.031 |