Gene detail

Gene detail information of Glyur000966s00025850

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19350.2	3.00E-108	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_003537962.1	0	PREDICTED: polyadenylate-binding protein RBP47B'-like isoform 1 [Glycine max]
COG	YP_679005.1	7.00E-11	RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
Swissprot	tr\|Q9SAB3\|RB45B_ARATH	5.00E-100	Polyadenylate-binding protein RBP45B
trEMBL	tr\|I1LJV7\|I1LJV7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G14150.1}

Sequence

Transcript Sequence

>Glyur000966s00025850.1
ATGGGGACGACGAGCGAGGAAGTACGAACTCTTTGGATTGGGGATTTGCAGTACTGGGTTGACGAATCTTACCTCTCTCAGTGCTTCGCTCACACCGGCGATGTTGTTTCCATCAAGATCATACGCAACAAGATGACGGGCCAACCCGAAGGCTACGGCTTCGTGGAGTTCGTTTCCCACGCCGCAGCCGAGAGGGTTCTCCACACTTACAACGGCGCTCAAATGCCCGGAACAGAGCTAGCCTTCAGGCTCAATTGGGCCTCTTCGGGAGATACTGGGCCCGACCACTCCATCTTCGTGGGCGACCTAGCACCCGATGTCACCGACTATCTGCTACAGGAGACTTTCCGGGCCCATTACCCTTCCGTTAGGGGCGCCAAGGTGGTGACGGACCCTCTCACGGGCCGCTCTAAGGGGTATGGGTTTGTTAAATTCTCCGATGAAGCCCAGAGGAACCGTGCCATGACCGAGATGAACGGTGTTTTTGTTGGTAATTTGGATCTTAATGTCACTGAGGAGGAGCTTAAGCAAACCTTTTTGCAGTTTGGAGATATTGTATCTGTCAAAATTCATGCTGGCAAAGGATATGGTTTTGTTCAATTTGTGACTAGAACATCTGCTGAAGAAGCCATTCAGAGGATGCAGGGGAAGATGATAGGTCAACAAGTGATCCAAATTTCTTGGGGTAGTAGTACCTCAACTGCCAGACAGGACTTACCTGGTGGCTGGGGACCGCATATGGATCCAAGTCAATGGAGTGCCTACTATGGATATGGACAGGGTTATGAAGCCTATGCTTATGGAACTTCTCATGATCCTTCTTTGTATGCGTATGGTGCATATGCTGGTTTTGCACAATACCCTCAGCGGGTTGAAGGTGCTCAAGCTCAAGACATGTCAGCTATGTCTGTACCTACGGAGGAGTGTTATGATCCCCTGACAATGCCTGATGTCGACAAGTTAAATACTGCATATCTTTCAATACACGGAAATGCCATTTTAGGACGGTGCCTCTGGCAGAAAACCTCACCATTCTTACAGCAAGCTTAGGATCTAATTGTATTACACGGTCAATTTTATGCAATAGGCATGAACACTTCAAAATATGGCGGAGGTGATTCATGGTAGGCCTGCAACACATTTACTGGTTGAGACACAAGTCGCCTTAGATGAAGTTAGTGGCAGTGGTGGCTAAGAAGAATATCTGACATTACGTAACATGTTCTCATATTCTCTAGAACCCAACATGGGTAAAAAATCTATACACTTGAATTCGGTTTCCAGGAGATTTTACGTTGACACTCCAAACCTGCATCTTACCCCTTTTTTTAATTTACGTTTCAGCATGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00966	79084	81991	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000966s00025850.1	PF00076.17	RRM_1	11	80	1.50E-14
Glyur000966s00025850.1	PF00076.17	RRM_1	98	160	8.40E-15
Glyur000966s00025850.1	PF00076.17	RRM_1	161	224	3.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.115
SRR1783600	control	11.341
SRR1783602	moderate drought stress	10.765
SRR1811619	moderate drought stress	11.143

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.413
DRR006520	Root Summer glycyrrhizin high producing strain	10.434
DRR006521	Root Winter glycyrrhizin high producing strain	19.955
DRR006522	Root Winter glycyrrhizin high producing strain	19.633
DRR006523	Root Summer glycyrrhizin low producing strain	7.615
DRR006524	Root Summer glycyrrhizin low producing strain	8.170
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.450
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.137

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.536
SRR2868004	Drought Stress (root)	21.688
SRR2967015	Control (root)	23.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.451
SRR9715740	Leaf	6.928
SRR9715741	Leaf	9.745
SRR9715739	Root	6.233
SRR9715742	Root	11.732
SRR9715743	Root	10.106

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.873
SRR8749028	MeJA induced 9h	20.614
SRR8749029	MeJA induced 9h	22.867
SRR8749030	Uninduced	12.159
SRR8749031	Uninduced	13.214
SRR8749032	Uninduced	11.242

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.929
SRR8400027	Control - Root	17.231