Gene detail

Gene detail information of Glyur000966s00025846

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12080.1	0	GTP-binding family protein
NR	XP_004507094.1	0	PREDICTED: GTPase Der-like [Cicer arietinum]
COG	YP_007103947.1	4.00E-156	GTP-binding protein engA [Pseudanabaena sp. PCC 7367]
Swissprot	tr\|Q9TLX6\|MNME_CYACA	2.00E-11	Probable tRNA modification GTPase MnmE {ECO:0000255\|HAMAP-Rule:MF_00379}
trEMBL	tr\|A0A072UWG4\|A0A072UWG4_MEDTR	0	GTPase Der protein {ECO:0000313\|EMBL:KEH30215.1}

Sequence

Transcript Sequence

>Glyur000966s00025846.1
ATTTAATCGAAACGAATGCATGTATTGTATATAAGCNGGCTGGCATGCGGTGTAAAAAGTGAGAGAATCAGAATGAAGATTCATTCAAGATAAACCCCACCAAATGTTTAATCCCGAGAATTGAGATAGAGTTCCACTTCACTGTGACCAATGGCATCTATTTTCCAGTTACACGTTCCCACGCCCATCTCCTCATGCTGTACCGTCGCTAAAACCCTAAACCCCACTTCATTTCTTTGCGCGCTTTCTCACCGAAAATCCATCTCTGTCTCTCGCCGGAGCCTCTCCATCTCCGTCCTCCGGTTTAGCGCCGGCGAATTCCCAGGCACGGTCGCTGACGATGAACGAGCAGAGGAATCGGACCAGGTTGATTATTCCGACGACGATGACATTGATGACGTTGATGCCATCGCGCTCGAGCAAGAAGCGAAGAACGCAGTCCTAGAGTATTCAAGCTCTCTGTCGCGCATTTTGAGTATCGAAGATGAGAAAAATGATCTCAAGCGAACAGCTCAAACCTACAAGAGGAGCAAACAGAGGAAAAAAATTGTTAGTATAGCATTCAACTTGGCAAATTCTGGAGCTCTATTCAATATCCCTGACAATCTTCTCCCAAGGGTTGCTATTGTTGGAAGACCGAATGTTGGCAAGTCAGCATTATTTAATCGTCTCGTTGGGGGAAACAAGGCAATTGTGGTGGATGAACCTGGGGTTACCAGGGATCGTTTATATGGCCGATCATATTGGGGAGATCATGAATTCATGGTAGTGGACACGGGTGGTGTTCTCACTGTTTCAAAATCACAAGCTACTGTTATGGAAGAGCTGGCTATTACTACGACCATTGGTATGGATGGTATTCCACTTGCCTCTAGAGAGGCAGCTGTTGCCAGGATGCCATCAATGATTGAGAAACAAGCAATTGCAGCTGTGGAAGAATCATCTGTTATTATTTTCCTGGTTGATGGTCAGGCTGGTCTAACAGCAGCTGATGTGGAGATTGCTGATTGGCTACGTAAAAACTACTCAAATAAATGTGTCATTCTTGCAGTTAACAAGTGTGAATCTCCACGGAAAAGAATTATGCAGGTGTCTGAATTTTGGTCCCTTGGGTTTGAACCATTTCCAGTATCAGCTATATCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCAGGGATACAGAAAGTTGAGGAACCAAAGAATCTTGACGAAGAAGAAGATTATGTTCCTGCAATTTCAATTGTTGGTAGACCAAATGTTGGCAAAAGTAGCATTTTGAATGCACTGGTTGGTGAGGACAGAACAATAGTGAGCCCCATCAGTGGCACTACACGNGATGCTATCGATACTGAATTTACTGGAGCAGATGGCCAGAAGTTCCATCTTATTGATACTGCTGGAATCAGGAAAAAGTCGACTGTAGCCTCAGCTGGAAGTACAACAGAGGCTTTGTCAGTGAATCGAGCATTTCGTGCTATTCGTCGTTCTGACATTGTTGCTCTTGTCATTGAGGCCCTGGCTTGTATCACAGAACAGGACTACAAGATAGCTGAAAGGATAGAACAAGAAGGGAAAGGTTGCGTGATCGTTGTAAACAAGTGGGATACAATACCAAATAAAAATCAGCAGACAGCGTCATACTATGAGCAAGATGTCAGAGAGAAGCTTCGAGTACTTGGCTGGGCTCCAATTGTTTATTCTACTGCAATAGCGGGTCATAGTGTTGACAAGATTATTGTTGCCGCTAGTGAAGTTGAAAAGGAGAGATCAAGAAGGCTCGGTACTTCTATATTGAATCAAGTAGTGCGGGAAGCAGTAACTTTTAAGCCTCCTCCCAGGACACGAGGTGGAAAAAGAGGGCGTGTTTACTATTGCACTCAGGCTGCTNTAAGGCCACCTACATTTGTGTTCTTTGTCAATGATGCAAAACTTTTTCCTGAGACTTACCGGCGCTATATGGAGAAGAAGCTGCGTTCAGATGCAGGTTTTTCTGGTACTCCCATTCGGCTTCTGTGGCGCAGCAAAAGGAAAATGGGAAAAGATGAAGGCAAAGTTGTGACAAGGACCCAAGAAAATCTTGCATCACATGGTCGAAAATTGAGATCAACTGCACCGTAGGAGCAGACATTTTNTTGGATCGAAGTAACTGGTGTGGTTCTGTTTGTGTTGAAAAATGCGAAGAGGCTTTTATCGGGGATTTACTCAATTACTAAAATGCTTCTGCTCCCTGAAATTTATGAAGGTTGGTGAAAACTCCACAAGGACGGAATGTGTGCCTGAAGTTTTGTTGAGAATATGTCATTTACAGTGATCGTGATCTGTTTGGTAATTTTTAGTAAGCATTTCGAAGTTTATAGGTTTTGGGTTTTAGCACATTCAACGTCAATAACTACAGTGTAAATTTATCTATAGAAGTAGTTGTTAAATCAAATATAAGTTCTCGGATTTTTAATTCCGTGTCTCTTTTTTCAAATATTTAAGNTGGACATTTTCCAGTGATCGCACGGTCGTTACTCTTTGGGATGATGCTGAAGTTTTGTCAAGCAGTTGCAAGTAATTTTTCACGAGTGGAAGAATAATTTTTTTTTGTAAATACAGCATCATTTGAAGAAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00966	51804	58976	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000966s00025846.1	PF01926.18	MMR_HSR1	156	303	8.50E-23
Glyur000966s00025846.1	PF01926.18	MMR_HSR1	365	486	2.60E-24
Glyur000966s00025846.1	PF14714.1	KH_dom-like	545	626	1.40E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.602
SRR1783600	control	5.740
SRR1783602	moderate drought stress	7.408
SRR1811619	moderate drought stress	7.275

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.066
DRR006520	Root Summer glycyrrhizin high producing strain	12.601
DRR006521	Root Winter glycyrrhizin high producing strain	8.540
DRR006522	Root Winter glycyrrhizin high producing strain	8.322
DRR006523	Root Summer glycyrrhizin low producing strain	14.237
DRR006524	Root Summer glycyrrhizin low producing strain	14.226
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.693
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.008

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.323
SRR2868004	Drought Stress (root)	9.199
SRR2967015	Control (root)	10.520

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.388
SRR9715740	Leaf	28.068
SRR9715741	Leaf	17.573
SRR9715739	Root	1.768
SRR9715742	Root	5.503
SRR9715743	Root	4.813

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.149
SRR8749028	MeJA induced 9h	7.655
SRR8749029	MeJA induced 9h	7.591
SRR8749030	Uninduced	3.085
SRR8749031	Uninduced	2.579
SRR8749032	Uninduced	2.881

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.280
SRR8400027	Control - Root	12.209