Gene detail

Gene detail information of Glyur000966s00025842

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12860.1	0	dicarboxylate transporter 1
NR	XP_003539493.1	0	PREDICTED: dicarboxylate transporter 1, chloroplastic-like [Glycine max]
COG	NP_388638.1	1.00E-166	malate transporter YflS [Bacillus subtilis subsp. subtilis str. 168]
Swissprot	tr\|Q9LXV3\|DIT1_ARATH	0	Dicarboxylate transporter 1, chloroplastic (Precursor)
trEMBL	tr\|I1LQJ9\|I1LQJ9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G06190.1}

Sequence

Transcript Sequence

>Glyur000966s00025842.1
CTCTTCCCTCACAATTCAGAAACTCCCTCCATTTTGTTTTTTTTTTCTTTTTTTTTTCTGACGGAGAAATCAACATCTCAAGTTGTCAAAGTCGAGGATCACAAAGCCAAGGGAGGATAGCATAGCAGCACAGAAGCCACCAATTTCTCACCAACAAACAACGCCGCATATTCCAATCACAACCTCTCCACCGTCCGCTCCAAATCCAACGGCCCACAATCAAATCCCCCTCCTACCTCACCACCTTGGCTCAATTCAGATGCACACTATGACACACTATTAAGCCCCCCAACACACACCTCAACCGCACCAGACCCGAACCCCCCCAACCCAATGGCTTCCATAGCACTCACCACCGCAACCCTCCCATCTCTCCGCCTCCGCCCCAAATCCCCACCACTCCGCCACTCCACCACCACCTTCAAACCCCTTAAACAACCAATTCGCCACCACACTTCCATTTCCTTCTCTCCATCACCCTTCCCACTCTCCAATTTGAAACGCCCCACTCTAACTGTCAGAGCCTCATCTTCAGCCTCAGCCTCTGTCACTCCAGCTCCGGCTACTCCTCCGGCACAGCCATGGCAGGGCGCGGCAATAAAACCCCTGTTAGCATCTATAGCGACAGGTGTCATACTCTGGTTCGTCCCCGTCCCCGAAGGCGTCACCCGAAACGCGTGGCAACTGTTGGCGATTTTCCTGGGCACCATCGTGGGAATCATCACGCAGCCATTGCCACTCGGTGCCGTCGCCATGTTAGGGTTGGGCGTTTCGGTCCTCACCAAAACGCTACCGTTCGTGGCTGCTTTCTCCGGCTTCGGGGATCCAATCCCGTGGCTGATTTGCCTCGCCTTCTTCTTCGCCAAGGGTTTCATCAAGACTGGACTCGGCAACCGCGTCGCTTACCAATTCGTCTCACTTTTCGGTAGCTCTTCCTTAGGGTTGGGATATAGCTTGGTTTTCAGCGAGGCACTGTTGGCGCCTGCAATTCCTTCGGTTTCTGCTAGGGCAGGTGGGATTTTCCTTCCACTTGTTAAGTCCCTGTGTGTGGCCTGTGGCAGTAACGCCGGCGACGGCACCGAGAANAGGTTGGGGTCGTGGTTGATGCTTACTTGCTTCCAGACTTCTTGTATTTCGTCGGCGATGTTTCTGACTGCGATGGCGGCGAATCCTCTGTGCGCTACTCTTACTCAGAATTCGATTAACCAGACAATTGGGTGGTTGGACTGGGCAAAAGCTGCTATTGTTCCCGGGTTGGCGTCGCTTGTGTTGGTTCCGTTGATCTTGTATGTCATTTACCCTCCTACCCTGAAAACCAGTCCTGATGCACCCAAGCTTGCTAGGGAGAAGTTGCAGACAATGGGGCCCATGACCACCAATGAGAAGATCATGACTGCCACTCTGCTTCTCACGGTGGGACTTTGGGTTTTTGGAGGGATTCTTAATGTAGATGCTGTAACTGCTGCCATTCTTGGATTAGCTGTACTCCTTATCACAGGGGTTGTAACATGGAAAGAATGCTTAGCTGAGGGAGTTGCCTGGGATACTCTCACGTGGTTTGCTGCCCTCATTGCAATGGCTGGGTATTTGAACAAATATGGTCTCATTTCTTGGTTCAGTCAAACTGTAGTCAAGTTCGTTGGTGGATTGGGTCTCTCATGGCAACTATCTTTTGGTATTCTGGTCCTCCTCTACTTCTACTCTCATTACTTCTTTGCAAGCGGAGCTGCTCATATTGGTGCCATGTTTACTGCATTTTTATCTGTTGCTACTGCTCTGGGGACCCCACCATTCTTTGGAGCCATGGTGCTGTCCTTCCTCTCCAACCTTATGGGCGGCCTTACTCATTATGGGATTGGGTCAGCTCCAGTGTTTTTCGGTGCCAACTATGTTTCACTCGCTAAATGGTGGGGCTATGGCTTTGTTATTAGTATTGTTAACATTATAATCTGGCTTGGACTCGGATCATTTTGGTGGAAGGCCATTGGCTTGTGGTGAAAAAGGGCCTGATATCGAAATTTGCCAACACAATTTAAGATTTTTGCATACATCCATGTACGAATTCTCCTTATTATCAGCAGTTGAATCAAACTGCTAATTTTTTTTCCCGATGCTTTTCTAGAAATAATCTTCGGGAGGTTTTGATGTAGATTTAGGTGGGAGCCTGGATACAGTTGGTCATATTAGACCTGCGGTAGAACTGTTACATTATTATTGAGATGTAAAGACATCATGTTATTCAGGATATGTGGTCACTGTATGCTTCGTATTGGGGTTTTCCTTAAATTTTTCCGAACAAGTGCTATTTCTATTTGTATGGGATGGCAATAGTGTTTGTGTGAAATAATTAAGATGGTGCATTGTCGCGTGAAATTTGACAGATCATCAGAGTTTGTGTGAAATAATTAAGATAGCGCATTGTCGCCTGAAATTTGACAGATCATCAATTGCTGGCAACTTCTATCGGGATTTTTCTGTTCCCAACAAGGTAATGCGTTGCATTCTCCAGAGCTAACAAGGAATTTGTTGAAGCGAGTTTATCATGTTATTTGTTGGGAAGATGCTAAACTTTATTGTGTTCATGAATGTTTAGAAGCATACGTGTTAGACGAGAGGGAATGGCTGACTAGAAATATGAGATCTTTATAAGAAGCTGAGGAATTTGAGATTCACAACATTGGACCCAAAAAAAAAACAAAAAGGAAATGCAGGGAGACCATAGCCGTAGTCTAANGCATATGGAGTAATGGGGAGAACCCAAGGGAAGGAAAGATACATTACATACAGTTAATAATCATACATATAAAAAACTTGCTTGATAAATGAAGGGAAGTAGAAGAAAAAAAGACTATACAGTTTCAATTTCTATGCTTTCTGGTTTCCAGTGTTGTGCCGTCTTTGAGACTTTCTTGTGCATCATTATCCATGCCAAGGCTGAAGAGTGCGACTGCTTGAAGATAGAATGATGTTGGCCAGGTGGGAGAAATCGATTGTGCTTGCATGGCATCTCCAAGTGCCTCTTGTGCCATGTCATTCATCAGGTAGCATAGGCAGCGCCTAGCGTACACAGTTGGTGATACCATGGTCCCACCATCAATGAACTACACAAAACAAGTATCATGAATTCTCTCTAACAGAATAAGTTATCACAGTTACACATTAACCACTGATCAGTCTTTATTTAACATGCTTTGTAAGTAATGGAGGGGAACATATGGTCTATGGTATTGGTAAGGTTCAACCGGCTTTGATTATGTCTATTCTGGAAGTTGCTCCTTCTTTCAGCAACTTGCTAGAGAGATGATATGGATACATTTAGAACCATCCCTCAACATTAAATNTCAAATGCTAATTGAGTAATTCCAAAGCATTGACCCCTTTACTCTATCAACTCATCATTCTTGTTCTAGCCATAAGATTCAATCTAGTAAAGACAANTTTGACAAATATTTCATTAAATTGACAGTGGAAAAATATTTATTTGTTTTGATGTATTATCCAAATGCAATACTGTGACACTACAGATAATTGAATTTTGAGTGCTGTTTTGGAGATTTTTACTGGATTCTTCTTCCTAGCATTTCTAGCTGACTTACTTGTGTATAGCAGTCAATGGCTGTAGAGAAGTCTCTTGCATGAAAAGCAGAATCACCATGCTTCTTAGAATTTAGTGTTTCTTGTATTTGATTTGTCCACATTTGGAAGGAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00966	22593	27450	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006814 sodium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000966s00025842.1	PF00939.14	Na_sulph_symp	88	554	4.40E-169

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.986
SRR1783600	control	26.928
SRR1783602	moderate drought stress	19.994
SRR1811619	moderate drought stress	19.606

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.522
DRR006520	Root Summer glycyrrhizin high producing strain	26.853
DRR006521	Root Winter glycyrrhizin high producing strain	6.320
DRR006522	Root Winter glycyrrhizin high producing strain	6.044
DRR006523	Root Summer glycyrrhizin low producing strain	20.346
DRR006524	Root Summer glycyrrhizin low producing strain	20.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.010
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.062

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.664
SRR2868004	Drought Stress (root)	30.271
SRR2967015	Control (root)	26.397

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.926
SRR9715740	Leaf	33.708
SRR9715741	Leaf	24.412
SRR9715739	Root	31.270
SRR9715742	Root	31.513
SRR9715743	Root	32.865

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.095
SRR8749028	MeJA induced 9h	8.417
SRR8749029	MeJA induced 9h	5.545
SRR8749030	Uninduced	4.727
SRR8749031	Uninduced	0.902
SRR8749032	Uninduced	1.573

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.997
SRR8400027	Control - Root	39.006