Gene detail

Gene detail information of Glyur000966s00025840

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29510.1	4.00E-58	Protein of unknown function (DUF3527)
NR	XP_004507144.1	0	PREDICTED: uncharacterized protein LOC101508587 isoform X1 [Cicer arietinum]
trEMBL	tr\|A0A072UKG3\|A0A072UKG3_MEDTR	0	DUF3527 domain protein {ECO:0000313\|EMBL:KEH30207.1}

Sequence

Transcript Sequence

>Glyur000966s00025840.1
ATTTTTACTATCAAAACAGAGTGCAAGTGTGAACGCGTCTGAAGCTCGGTGTCTTGTTGCAGGTGATATTCTCTGAGCCTTAGTGGACTTTGGGGTCTGAACTCTGAACTGAGGAAGAAAAGTGAGGCCCTTTACCCTTTGGTATATACACGACACGACATTATTTATCTTCTTTTTTCTCTTTCATCATCTTTGGTTGTCAAATGCCATATCCTTTTGCAGCACCGACACTCCTCGTTTCGTCTCCAAGCTTCTCACATTGCCATTGCCACCTTTCCTGCATTCTTCCCCTTTTCTCAGTTGTGCAGAAGAAAAACAAACTGTAGTATTTTCTGGATTGCAATCTCTTTCAAAGACAAGGCGGTAGATTTGTTCCAGGGTTGGAGCTCAGCAAATTGATGGATAGTTGTCAGATCTGAAGTAAAATTCAGGAAACTATCTATCAGCATGAGTAGAAAGCTTTATGACCAGCTAAAGCCAGAGAAGTCTTCTNTGCGATGCACTGATCATCATCGTGAAATTAACAAAAATGCGGAAGACAGCACTTTGAAATCTTACAGGAATCATCACAAGCAAGGGAATTATGGAAGGGAATATGAAGATGAGCTGGTTAAGTACATGTCCAATTTGCCAGGTTATCTACAGAGGGAAGGGAAANATCGTGAGAAAGTTTTAAATGTTGGGGTTATTGATTGGGCCCGCCTAGAACAATGGCAATGCAGTCAGAAACAAGTTTCACATAGAAGTAGCAGGAGTTCAACATCTAGTNACACATCCTCTTCTGTTTCAACAGAGAGGTTATCTGGTCAAAAGACATTCCATCTGTCACTGCANTCTCACTTTATGGCATTTCCAATTCAAGACGACTCTCAACCTGTTGAATCCTCTAGAAGAAGTGTTGGAAATTGTCAGAATNTTAGAGGTAGCCGCAGTAGTATTAACACACAGAGCAAACATGTTAGAGCAGATGATCATCTTTCCCAGAACCATCCTAACAGTAGACTGAAAGGATGTGACAGGAAATATTTGGGTCCATATATTGCTAAAGAAAGTGGCATTTTTCCAAATGACCAAATGCACGAGCCAGCATCATGTGCTAAGTTAGAAATGTGCACTAAAGATGGTGGAATGGAAAAAAGAGTAGAGACTTTGAATCAACCAAATATTGATAATGCTGTGCAAGGTACGCTCAGGAAAAGGGAGCCAGTTGTTCATCTTTTGCCTAGAGACAGCCCTCGGAATAGTCATTGTCGAGTTCCTCATATACGAACATCCTTTGCTCAGAAGTCAGAAAATCATAGTCGATTAAGCTTTTCAGAAAAGCCTAAGGAACTCTTTCATGAAGATCTCAATAATGATATTTTGAATTCCTGTACTCTTCCAGATGAACTTAGCTGTAATGATTCTCAGCGGAAAGGGTCCGCATGCAGTTCCACAGATCTTGAAAGTATCAAACTTCCTGCTTCTACTTTCTCATCACCCTTATCTACTTTGTCATCACCCTTATCAGTCAGAATGGGTATAAGCCCATCCAAATCTAGAAAAGCTGAGGAAAGGAAACAAACCATAGCCAAAACTTCATCTGCAAATGGGCTTCTCCATGAATTAGACCAAAAGGTAACATCTGAAAAGTCAAGAAGCTCTTCACCTTTCCGTCGATTAAGCATCAACNTTGGCCATACAAGCAGAGACTCTGCTTGTAAAGAGGGTGGGTATGTGCCACATCAGAGCTCTACAGCAGCTGTTAGATCGAGCTCAGAAAATGCGAGAGGTTATGCTAGCTCAAACATTTCAGGCAATGNTAAACCTGGTGATGCCAGCAGAAGCAGGTCAAGCCCTTTAAGGAGGTTACTAGATCCATTATTGAAACCAAAGACNGCTAGGATCAGTCACTCCTCAGAGTCATCTCAGAAGGATTCAGTGTTAACAGATAAGAATTGTAGGTCAGCTAATGGGAGATTTTCCACTCTACAGCCAGACAAAGAAATGGATAAGAACCATAGGTTCGGTTGTAGCCCAGCTAATACCATTGATTTGTCAAGGGCCAAGAAGCACATCCCACTGATGACTCAAGCTCTTCTGAGAATTGCTGTGAGGAATGGCCTGCCCCTTTTCACATTTGCTGTTGACCATANCGACAGCAACATTCTTGCAGCCAGAGTGAAGAACTTAGGTGCCTCAGGAAAAGATGAATGCAACCGTATCTATACCTTNTTCACCTTTACGGAGGTTAAGAAGAAGAATGGAAGTTGGATGAATAAAGCAGGCAGAAGCAAAGGCCCTGATTACATTCCTCAAGCAGTTGCCCAAATGAAGGTTTCTGATTCACACTATTATGATTTAACCAGCCAGAATTGTGTGGACTCCTCTACCCGGAAAGAGTTTGTTTTGTTTTCTGTAAAGCTCGGGCAGGAGGATGCTCAGTCCACTGACTATCAGCCAATTCCAAACGATGAGCTTGCGGCTATTGTTGTCAAAATACCTAAAGCTATCAGTTTCATCAATGATCAACATCAGAGTAGTTGCCACAGTGATAGTCATGACCTTGTCCATGCAACAGTTGTGCTCCCAGGTGGGGTTCATAGTCTTCCAAGTAAAGGTGGACCTTCTTCACTGCTTGAGCGCTGGAAATCAGGTGGATCATGTGACTGTGGTGGTTGGGATTTGGCTTGCAAACTCAAAATTCTTGCTAGTGAAAATCAAGCCTGTAGAAAACCAAGATCATCCAAAGCTTATTTTGCAGATCAACTCAGTCTTTTTGTTCAGGGGAATGAACAAGATCTCCGGGCAGCGTTCAGTTTAACCCCCTTCGAGCATGGAATGTATTCCATAGCCTTTGATTCTTCACTCTCACTTTTGCAAGCATTCTCCATTTGCATAGCATTAGTGGATAGCAGGATGCCTTGTGATCAGCTTTCTGGATCAAGAAACTCCGTTGAAGGAAAAAATCCAAGGGAAACACTATTGGTGCAAACTGAGGAACTAAAGGCATTTGGTAAATTGGAGGATATTCCTGCNAGTTATATTTCTTATCCACCACTTTCTCCCGTTGGTAGGGTCTAAAATTAACATGTAGTAGAGAGTCTAGAGGCATGTCTCTCTCTGTTCGATTAAATTGGCAATATGGGCAAAGTGCAAACGGCTTAATGAATCAATTGGCCCCTGGGATTAGCCACTGTTACTGATCAGATCTGCTGCATATAGGTAAAATTCCTGGCAAGTTCCTCACAATCATCATGACAAGCTACAACTACAATATAAGATTGGAGCAGGATCTTGGTACTTTTTTTTTTTTTCCAACAGAAGCAAGTATTAGTATTCAAAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00966	11153	15617	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000966s00025840.1	PF12043.3	DUF3527	540	657	3.00E-22
Glyur000966s00025840.1	PF12043.3	DUF3527	667	817	2.10E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.784
SRR1783600	control	41.284
SRR1783602	moderate drought stress	25.616
SRR1811619	moderate drought stress	25.159

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.026
DRR006520	Root Summer glycyrrhizin high producing strain	24.375
DRR006521	Root Winter glycyrrhizin high producing strain	0.167
DRR006522	Root Winter glycyrrhizin high producing strain	0.163
DRR006523	Root Summer glycyrrhizin low producing strain	16.275
DRR006524	Root Summer glycyrrhizin low producing strain	16.521
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.501
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.527

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.934
SRR2868004	Drought Stress (root)	2.900
SRR2967015	Control (root)	4.410

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.638
SRR9715740	Leaf	0.038
SRR9715741	Leaf	0.154
SRR9715739	Root	2.451
SRR9715742	Root	9.908
SRR9715743	Root	8.133

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.286
SRR8749028	MeJA induced 9h	0.680
SRR8749029	MeJA induced 9h	1.019
SRR8749030	Uninduced	0.076
SRR8749031	Uninduced	0.138
SRR8749032	Uninduced	0.134

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.412
SRR8400027	Control - Root	24.781