Gene detail information of Glyur000966s00025839 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07400.1 | 1.00E-22 | HSP20-like chaperones superfamily protein |
| NR | KEH30206.1 | 6.56E-70 | 17.5 kDa class I heat shock protein [Medicago truncatula] |
| COG | YP_003301763.1 | 3.00E-09 | heat shock protein Hsp20 [Thermomonospora curvata DSM 43183] |
| Swissprot | tr|P04793|HSP13_SOYBN | 5.00E-33 | 17.5 kDa class I heat shock protein |
| trEMBL | tr|A0A072ULC9|A0A072ULC9_MEDTR | 2.00E-70 | 17.5 kDa class I heat shock protein {ECO:0000313|EMBL:KEH30206.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00966 | 3585 | 5616 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000966s00025839.1 | PF00011.16 | HSP20 | 76 | 163 | 3.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 286.820 |
| SRR1783600 | control | 293.064 |
| SRR1783602 | moderate drought stress | 415.393 |
| SRR1811619 | moderate drought stress | 425.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 358.215 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 368.778 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 105.420 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 105.333 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 406.102 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 434.186 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.409 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 104.113 |
| SRR2868004 | Drought Stress (root) | 117.056 |
| SRR2967015 | Control (root) | 205.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.817 |
| SRR9715740 | Leaf | 18.986 |
| SRR9715741 | Leaf | 28.002 |
| SRR9715739 | Root | 221.539 |
| SRR9715742 | Root | 104.078 |
| SRR9715743 | Root | 120.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 126.714 |
| SRR8749028 | MeJA induced 9h | 67.025 |
| SRR8749029 | MeJA induced 9h | 80.600 |
| SRR8749030 | Uninduced | 12.830 |
| SRR8749031 | Uninduced | 5.495 |
| SRR8749032 | Uninduced | 47.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 118.372 |
| SRR8400027 | Control - Root | 111.283 |