Gene detail information of Glyur000964s00027954 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04240.2 | 4.00E-18 | RING/U-box superfamily protein |
| NR | XP_007141371.1 | 2.39E-39 | hypothetical protein PHAVU_008G190100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SI09|XERIC_ARATH | 6.00E-23 | Probable E3 ubiquitin-protein ligase XERICO |
| trEMBL | tr|V7B703|V7B703_PHAVU | 9.00E-40 | Uncharacterized protein {ECO:0000313|EMBL:ESW13365.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00964 | 92136 | 93940 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.215 |
| SRR1783600 | control | 25.456 |
| SRR1783602 | moderate drought stress | 23.404 |
| SRR1811619 | moderate drought stress | 22.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.754 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.402 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.578 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.936 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.064 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.045 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.742 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.601 |
| SRR2868004 | Drought Stress (root) | 5.288 |
| SRR2967015 | Control (root) | 4.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.720 |
| SRR9715740 | Leaf | 5.490 |
| SRR9715741 | Leaf | 3.265 |
| SRR9715739 | Root | 2.977 |
| SRR9715742 | Root | 1.483 |
| SRR9715743 | Root | 1.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.424 |
| SRR8749028 | MeJA induced 9h | 15.485 |
| SRR8749029 | MeJA induced 9h | 7.817 |
| SRR8749030 | Uninduced | 6.243 |
| SRR8749031 | Uninduced | 11.798 |
| SRR8749032 | Uninduced | 5.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.892 |
| SRR8400027 | Control - Root | 15.994 |