Gene detail

Gene detail information of Glyur000964s00027946

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07590.1	4.00E-167	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004487242.1	0	PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q940Q2\|PPR19_ARATH	0	Pentatricopeptide repeat-containing protein At1g07590, mitochondrial (Precursor)
trEMBL	tr\|A0A072VDD0\|A0A072VDD0_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:KEH39433.1}

Sequence

Transcript Sequence

>Glyur000964s00027946.1
ATTGAGAGAGGGGATTAGACTTTAAAATGGAGATGAGACTTATTGGTATGGTATAACTTTGTTAAGAATTTTTTTTATATATCCAATTAAGTTAGGATAACAAAATATCTAAATTTTAGGTTCTAAAAAATATTGATAATTCCGAAAGCNAAAAGTGTAAAAGGCATGAATGTGGCGCCAATGTGTGCTTTGGAGTTAGTTAGGACGAGCATGAGCATGTGGAGTCTGAGAGGCATCGTACAAGCGAAGTTCNTTGAGTCAATACGTCGAACAACTTGTGGCATTGAAACCCGCCTTAGTTTGAGATTATTGTGCACCCAAACAACACAAAACCTGGATAGCTTGTGTAGGAGAATAGAGAAGCTTCCCAAAGGAGAATCGGTGGGGTCTGCTTTACGTAGTTGGATGCGAGATGGCTTCCCCGTTCGCAGNGGTGACGTCTTTCACGCCATTAACCGTCTCAGGAAGCTCAACATGAACAAACGCGCACTTGAGCTCTTCACTCGTGTTCCTCAGGAGTTTCAGAACGAGTTGCTCTACAACAACCTTGTGATTGCGTGCTTGGATAAAGGTGTCATAAGGCTTTCACTTGAGTACATGAAGAAAATGAGGGAATTGGGTTATCCCATCTCCCACTTGGTTTTCAACCGCCTCATCATTCTGCATTCCTCACCCAGCCGCAGGAGGATGATACCCGGATTACTCACCCAAATGAAGGCTTATAAGGTCACCCCACATGTGTCCACCTACAATATTTTGATGAAAATAGAGTCCAATGAACATGATCTTGAGAATTTGTTGAAGGTCTTCAGTCGTATGAAACAAGCACAGGTTGAACCAAATGAAATATCTTACTGCATTTTGGCTACAGCACATGCTGTTGCCAGGTTACACACTGCTACTGAAACATATGTCGAGGCGGTGGAGAAGTCTATGACGGGGAATAACTGGTCAACATTGGATGTCCTGCTTATATTGTATGGGTATCTGGGGAATGGAAAGGAGCTGGAAAGAATTTGGGGAATCATTCAAGAACTCCCCTTTGTGAGATCTAAAAGTTACATGTTAGCCATTGAAGCATTTGGGAGGATTGGACAGTTAAACCGAGCAGAAGAAATTTGGTCAGAAATGGAATCAACAAAAGGATTGAAATCTGTAGAGCAATTCAATTCAATGATAACTGTTTATTGCAANCATGGGTTACTTGACAAAGCATCTAGATTGTACAAAAATATGAAGACCATTGGGTGCAAACCGAATNCCATAACTTATCGTCATCTTGCTCTTGGCTGCTTGAAATCTGGTATGGCAGAGCAAGCTTTGAAGACATTAGACTTGGGCATGCGTTTGACAATTAACAAGAGGGTTAGAAATTCAACTCCATGGTTGGAGACCACTCTTTCAATTGCTGAGCTTCTTGCTGTAAAAGGTGATGTGGGAAATGTTGAGAGACTATTTAAAGAATTTCATGAAGCTAAGTATTGTAGGTATACTTTTGTATATAATACCTTGATTAAGGCTTATGTAAAAGCTAAGATTTATAATCCAGATCTTTTGAGAAGGATGATTCTTGGAGCAGCTAGGCCTGATGCTGAAACTTATAGTCTTTTGAAAATTGCTGAACAATTAAATGTGATGGACAAAGAGTGGACTAAACTTCCAAGATTCAGTAGAGAGTTCATCAACGGCTACAATGTTTGGGTAAATCATGGGGAGGAAATACCAACGCCCGGTAGAAAGCGTTGCTATGAAAGAACTGCTACACCCTCTGTGTTAAAAAGAAATGAAGAAATTGATGCTCTTAAGAAACAACATTATAATGACATGACTAGCCTGAGGAAGAGGATTGAACGATTAGAAGCACTTGTAAGATTTCTGCTGAAGCAGCTAATCCCAAATTTAGATGAAGAGGCTGTGGATAATATAATGACACACACTTTAGGCGATGATAATAGTGCAGCACCACAATCGTCTATATCAACCCAATGTTCTCGTTATGAAAAGTTTGGACAGGAAGATCATTCTCAAGATACAGAAGAATCATCATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00964	39645	45285	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000964s00027946.1	PF13041.1	PPR_2	190	234	4.00E-08
Glyur000964s00027946.1	PF13812.1	PPR_3	298	329	0.0081
Glyur000964s00027946.1	PF13041.1	PPR_2	334	376	1.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.042
SRR1783600	control	1.043
SRR1783602	moderate drought stress	1.054
SRR1811619	moderate drought stress	1.044

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.600
DRR006520	Root Summer glycyrrhizin high producing strain	1.642
DRR006521	Root Winter glycyrrhizin high producing strain	3.493
DRR006522	Root Winter glycyrrhizin high producing strain	3.443
DRR006523	Root Summer glycyrrhizin low producing strain	0.440
DRR006524	Root Summer glycyrrhizin low producing strain	0.454
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.021
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.003

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.021
SRR2868004	Drought Stress (root)	2.986
SRR2967015	Control (root)	3.124

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.068
SRR9715740	Leaf	0.965
SRR9715741	Leaf	0.845
SRR9715739	Root	0.677
SRR9715742	Root	0.510
SRR9715743	Root	0.688

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.308
SRR8749028	MeJA induced 9h	2.690
SRR8749029	MeJA induced 9h	2.190
SRR8749030	Uninduced	1.025
SRR8749031	Uninduced	2.214
SRR8749032	Uninduced	1.456

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.047
SRR8400027	Control - Root	2.949