Gene detail information of Glyur000964s00027942 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59970.1 | 3.00E-41 | Histone superfamily protein |
| NR | ACG30677.1 | 8.72E-66 | histone H4 [Zea mays] |
| Swissprot | tr|P0CG89|H4_SOYBN | 7.00E-67 | Histone H4 |
| trEMBL | tr|Q5NSW2|Q5NSW2_FRAAN | 5.00E-65 | Histone H4 {ECO:0000256|RuleBase:RU000528} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00964 | 26426 | 26737 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000964s00027942.1 | PF00125.19 | Histone | 28 | 94 | 2.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.619 |
| SRR1783600 | control | 48.223 |
| SRR1783602 | moderate drought stress | 30.658 |
| SRR1811619 | moderate drought stress | 28.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.864 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.270 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.276 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.339 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 55.545 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 55.187 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.980 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 245.481 |
| SRR2868004 | Drought Stress (root) | 126.627 |
| SRR2967015 | Control (root) | 104.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 60.742 |
| SRR9715740 | Leaf | 11.778 |
| SRR9715741 | Leaf | 16.489 |
| SRR9715739 | Root | 40.683 |
| SRR9715742 | Root | 23.258 |
| SRR9715743 | Root | 28.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 160.613 |
| SRR8749028 | MeJA induced 9h | 70.760 |
| SRR8749029 | MeJA induced 9h | 98.056 |
| SRR8749030 | Uninduced | 24.000 |
| SRR8749031 | Uninduced | 35.116 |
| SRR8749032 | Uninduced | 16.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 157.785 |
| SRR8400027 | Control - Root | 134.265 |