Gene detail information of Glyur000963s00023043 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42310.1 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | KEH36300.1 | 0 | PPR containing plant-like protein [Medicago truncatula] |
| Swissprot | tr|Q8L844|PP413_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g42310, mitochondrial (Precursor) |
| trEMBL | tr|A0A072VDR6|A0A072VDR6_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH36300.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00963 | 64542 | 70879 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000963s00023043.1 | PF13041.1 | PPR_2 | 253 | 296 | 8.00E-11 |
| Glyur000963s00023043.1 | PF13812.1 | PPR_3 | 360 | 391 | 0.00033 |
| Glyur000963s00023043.1 | PF13041.1 | PPR_2 | 393 | 439 | 8.20E-12 |
| Glyur000963s00023043.1 | PF13812.1 | PPR_3 | 465 | 496 | 0.013 |
| Glyur000963s00023043.1 | PF01535.15 | PPR | 501 | 529 | 0.00015 |
| Glyur000963s00023043.1 | PF13041.1 | PPR_2 | 531 | 576 | 2.00E-15 |
| Glyur000963s00023043.1 | PF12854.2 | PPR_1 | 597 | 627 | 4.00E-07 |
| Glyur000963s00023043.1 | PF01535.15 | PPR | 640 | 669 | 2.60E-05 |
| Glyur000963s00023043.1 | PF13041.1 | PPR_2 | 675 | 718 | 1.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.168 |
| SRR1783600 | control | 7.074 |
| SRR1783602 | moderate drought stress | 7.432 |
| SRR1811619 | moderate drought stress | 7.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.299 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.330 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.443 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.125 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.087 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.266 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.527 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.905 |
| SRR2868004 | Drought Stress (root) | 8.435 |
| SRR2967015 | Control (root) | 9.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.200 |
| SRR9715740 | Leaf | 14.481 |
| SRR9715741 | Leaf | 10.938 |
| SRR9715739 | Root | 3.114 |
| SRR9715742 | Root | 4.309 |
| SRR9715743 | Root | 4.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.707 |
| SRR8749028 | MeJA induced 9h | 5.545 |
| SRR8749029 | MeJA induced 9h | 5.621 |
| SRR8749030 | Uninduced | 8.678 |
| SRR8749031 | Uninduced | 8.340 |
| SRR8749032 | Uninduced | 7.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.569 |
| SRR8400027 | Control - Root | 9.935 |