Gene detail

Gene detail information of Glyur000963s00023038

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20540.1	9.00E-161	Transducin/WD40 repeat-like superfamily protein
NR	XP_003523140.1	0	PREDICTED: WD repeat-containing protein DWA2 [Glycine max]
COG	YP_001514565.1	4.00E-07	WD repeat-containing protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q6NPN9\|DWA2_ARATH	0	WD repeat-containing protein DWA2
trEMBL	tr\|I1JSW6\|I1JSW6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G02030.1}

Sequence

Transcript Sequence

>Glyur000963s00023038.1
CTTGCTGAAAGTCCCTCGTACAAGCCCACAGCACAGACAGACCCAAAAAAAAGCCCACATCACAGCTTCCGTGAAAAAAAAAACCCAGCTAGCAGCAACCGCGAACTGCGGTGCCATTTTCGGGTTTAACTCCAGACAGTGTTTCTGCATTGAGGTACAGTAGCGGATTCAGCGTCCGGCTAAGCAGCAAGCAAGAGCAATGCAAGCTGCATCATCTGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCGGATGTAAAGGCAGACACAGATCACACTAGTTTCCTTGCCGGAACTCTCAGCCTTAAAGAAGAAAATGAGGTACATCTGATTCGGCTCTCGTCAAGTGGAACCGAACTGTTCTGCGAGGGATTGTTTTCGCACCCGAACGAGATCTGGGACCTTGTCTCCTGTCCTTTTGATCAGCGAATCTTCTCAACCGTCTACTCTAACGGTGAATCGTATGGAGCAGCAATATGGCAGATTCCTGAGTTATATGGCGAGTTAAATTCCCCTCAGTTAGAGAGAATTACCTCCCTTGACACTCCTTCCGGTAAGATTAAATGTGTTCTTTGGTGGCCAACTGGAAGGCATGATAAATTGATTAGCATCAATGACGAAAATCTATACTTGTGGAGTTTAGATGTTTCCAAGAAAACTGCACAGGTACAATCGCAAGATTCAGCGGGTATGCTGCACAAGTTATCTGGAGGGGCTTGGGATCCGCATGATGTGAATTCTGTTGCTGCAACTTGTGAATCATATCTACAGTTTTGGGATGTGAGAACAATGAAGAAGACTCTTTCGATTGAGTGTTCCCATGTCCGCAGTGTTGATTACCATCCTGGAAAGCAGAACATACTTGTTACTGCAGAACACGAGTCTGGGATACACATTTGGGATCTAAGAAAACCAAAAGTTCCCATCCAAGAGCTTCCAGGACATACACATTGGACATGGACTGTCAAGTGTAACCCGGAGTATGATGGAATGATCTTGAGTGCCGGCACAGATTCAACTGTCAACTTGTGGTTGGCCTCTATAAACCATGATGAGTTAACAACTGAAAGCCAAACAGATTCACCTGCCCGTTGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGACTTACATGGAGTTCACGTGAACCATGGATCTTTGCATCATTGTCCTATGATGGAAGGGTTGTTGTAGAATCGGTTAAGCCTTTCATCCCCAAAAAATGACGTTCAAGACCAATCTCCTTGCTGCTACCATTTCTCATCTTGTTGTGTGTCTGTAATTTCCTGCCTCGCGGGTCTTGAGATAAACAGATGAGTGCAAGGCCCAACATGTCACCGCTGGTGGGTTTGATGTGGCTGAAGAGGTTTGATGTTACATTGGCATGACATCTTTGACCAGGAATCATTGATAGCTCAGAGATCAACAATTTTTTTATAATTTTTTTTTATCTTTCAACTTTGGAATTGTTTAGGTTGGATTTGTTTCTAGCCTATTCTTTGGTTTGACATCCATCTTATGTAATTCATGGAGTCATTAATGTAATCTATGGAACTGCAAGGTCTTTCTGTATCTCCTGAATTCGTCTTCTATTATGTTTTTAATTTCGTGGAAAGATAATAACCTCTTTCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00963	22501	27587	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000963s00023038.1	PF00400.27	WD40	243	280	2.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.078
SRR1783600	control	20.153
SRR1783602	moderate drought stress	17.078
SRR1811619	moderate drought stress	16.905

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.877
DRR006520	Root Summer glycyrrhizin high producing strain	21.980
DRR006521	Root Winter glycyrrhizin high producing strain	13.772
DRR006522	Root Winter glycyrrhizin high producing strain	13.624
DRR006523	Root Summer glycyrrhizin low producing strain	19.489
DRR006524	Root Summer glycyrrhizin low producing strain	20.018
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.942
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.208

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.159
SRR2868004	Drought Stress (root)	38.649
SRR2967015	Control (root)	41.042

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.959
SRR9715740	Leaf	20.253
SRR9715741	Leaf	20.322
SRR9715739	Root	10.339
SRR9715742	Root	12.560
SRR9715743	Root	11.917

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.991
SRR8749028	MeJA induced 9h	39.303
SRR8749029	MeJA induced 9h	38.990
SRR8749030	Uninduced	17.734
SRR8749031	Uninduced	9.386
SRR8749032	Uninduced	16.494

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.456
SRR8400027	Control - Root	47.168