Gene detail

Gene detail information of Glyur000962s00030566.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51990.1	2.00E-38	C-repeat-binding factor 4
NR	AAV66464.1	7.27E-93	drought responsive element binding protein [Glycine soja]
Swissprot	tr\|Q9FJ93\|DRE1D_ARATH	2.00E-58	Dehydration-responsive element-binding protein 1D
trEMBL	tr\|Q5RM57\|Q5RM57_GLYSO	3.00E-93	Drought responsive element binding protein {ECO:0000313\|EMBL:AAV66464.1}

Sequence

Transcript Sequence

>Glyur000962s00030566.1
GTCACCAACACTCACACTACAACAAAACCTATATATCAAAAATATTCAGTTCCCAATTTCCCTCCCAATACCCTTTTACACACTCTCTCCCTAAGTGTGCAAAACACACACACACAGACACACACATATACACAATGAACAACCACTCTTTCAAGCCACACCCCATTTCCCCACAAGCCTCCTCTTCATTTGACATGTCATCGCCGGCATCAGAGAGCTCTCGTGGGGTGCCAATATCATACGAGGAGGAGGTGGAAGTGATACTGGCGGCGAGCCACCCGAAGAAGCGTGATGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTACCGGGGTGTGAGGAGTAGGAATCCAGACAAGTGGGTGTGCGAGATGAGGGAGCCCAACAAGAAGTCTAGGATTTGGCTGGGGACTTTCCCCACCCCTGAGATGGCAGCACGGGCCCATGACGTGGCCGCACTGGCGCTCAGGGGCCGCCACGCCTGTCTTAACTTTGAAGACTCGGCGTGGAGGCTCCCTGTCCCTGCCACTACCCACGCCAAGGACATACAGAAGGCGGCCACACANGCCGCCGAGGCTTTTAGGCCAAGTAAGACTTTTTATACTAGTAATGAGTCTAATGACACAAGGCACGAGAGTGTACCGGAAGCGGCCGCCAAGGAGCGTGGTGTTTTTGATATGGAGGAGGAGGAGGAGGAAGTGTTGGATATGCCGGAGATGGTGAGGAANATGGTGCTTATGTCCCCAACACATTCCTTCGGGTGTGAGTATGCGTACGGAGATTATGACGTGGACCTTCAAGATGCTGAGGTGCATAAAGTGCATTACTGCATCCCATCCCATCTTTTATATGGGAGAAAAGAATCTATTTTTGGGATGTCACCGAGGAAACCAATGGATCTGGATGCAAAATCAGCAGAATTTGGAGTCTTGTGCACACCACAGAGCCAAAACCATGTTAACACAAATTTGGCAGAAGCTCCAAATCTCTGATGCTTACTTGTAAATGTCATGGTCAAGAGAATTGCACAGGGATTTGAGACGTGTGAGATTCATTTAATGCCCTCACCCATATCAATCAACACTTCTTTGAATTTGGGCCTTCAAATTACAAGGCTTACAAGAAGTCAAAAGTGGTAAAAAAAGAAATTGTCTCTCCTTATTCTTGGCATCTCCTTTTTGTCCTTGGTTTCTCTGTTTTCTTTTGTTGTTCTTTATATTATAACCACAAAATTAAAAAAAAAATGTTGTTCATGAAAGTATTGCATGAAATTTTAAAGGATGGTACGGATTCATCTTTTAGACTCTTCAAAGTATAATTTTTTTTTTGAAATTTGTTTAATATATACCAATTCAATTAGTGACTCACTCAGTTCAATCAATGACCCATTGAGACAATATCTTGATCGAGTAGGTACCTGGTTCGAGTTTTATAAGATTGGTCGGGATTCAAAAAGGCATGGAAGACAGTGCAAACTTAAATTTCACTAAAAAAAAAAAAGTATGCCTCATACAAGGAGGAAAACATAAGTTACAAAGACAAAAAACACAGAAAACCATCGTGTTAAGGCATTTTCAAATAAATGCCCCTCACACGAGGAAAATGAAAGAGAGAGTTCTGATGTACAAATCAAGGTAAGCATATGGCGGCAGCAGCAGCAGCATGTGTCCCTTCATCTGATCCACCAGAATGGCCATTAGGGGTCAACCAACAACAACACTATTTNACTTTCTTAAGGAGAGCAGTGGTTCTAAACTCAGCATCATCCCTTGTGTAACTCCACCAAAGGAATGTGAGAGGGATGTTTGCTGCATTCCATAGAGCATGAGCATCCACATACCCCATGTAAGGTGGAAAGTCATATGTCTCCATGAGCATAGCTAGGCCTCCTCCCACCACCACTGCCCATAATTTCCGTCGTGCCGGATGGCTAGAAACACCGGCCCAAATTGCCCAAATGAGAAGCTGGGCAACAGCCATTAACATGCAAACTTTCGTGTTCAAACCTGAAAAAAAGGGTCAATGCATCAGCGATCACTCCCCAAGAACAGTGCTGCTTGGTCTCTGCAGACAACATTTTAATTAAATTAATCTNAAAAGGAATTGCATCCTCCATCACATTCAACACTACGGTCCTGTTTGGGTTCAAAAACTCAGCTTCTAACTTATGGAGAAGTTAGTTTTGCATTGCATTCTTATTTTACTCATATATGGAAAAGAGAAAAAATTGTTAAATAGTCACTGTTAAATAGAGAGCTTTTGATATATAGGTGTTTGTTGAGAAGTTAAAAAAGAGAGCTTTTGAAAAAAATTGCAGTGTAAAAGCTGATTTCGACTTATATGAGAAGTTAGTAGTTCAAAAACTCATATTATAAGCGCTTATACGAAAAACTATCCAAACAGGCTCTACAACAACAATAACAACAAAAATAACCAAGCTTTTTCCAACTAAGTTGGGTTGTCTNCATAAATCATAACTTACAGACATTTCATCTAAAAAATGAAAGATTACCACAAGTTTGTAGAAATTCAGATACAGAATACTAGTCACAAAAAGCAATCAAGAAAGCATAAACCATGACTCTAGTAGGGACATAAAAATTGTAAGATGTGTAACTCAATAGAAGACAACAAAAGTAGCAGCACTTCGTTTAAAAATAAANGATTACCATAATTAAGCTCGTAGAAATTCAGATACATGATATGAGTTGTCACAAAAGCAACCAAAGGAGCAGAAATCATGACTCTTGTAGCCTCATCCCTCACATTAAANGCTCGCAGTATTGCTAGAATGAGGGAAAATCCAAGTAAGGCCACAGCAGAAGAATAATTCAGCTTCTCTGTTAATTCCACAGCTCTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00962	65559	77735	-

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000962s00030566.1	PF00847.15	AP2	64	114	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.459
SRR1783600	control	12.279
SRR1783602	moderate drought stress	18.216
SRR1811619	moderate drought stress	17.388

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.620
DRR006520	Root Summer glycyrrhizin high producing strain	11.507
DRR006521	Root Winter glycyrrhizin high producing strain	43.843
DRR006522	Root Winter glycyrrhizin high producing strain	42.034
DRR006523	Root Summer glycyrrhizin low producing strain	17.043
DRR006524	Root Summer glycyrrhizin low producing strain	16.788
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.518
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.499

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.082
SRR2868004	Drought Stress (root)	10.753
SRR2967015	Control (root)	12.872

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.032
SRR9715740	Leaf	9.499
SRR9715741	Leaf	8.630
SRR9715739	Root	17.152
SRR9715742	Root	16.277
SRR9715743	Root	15.790

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.446
SRR8749028	MeJA induced 9h	4.393
SRR8749029	MeJA induced 9h	5.371
SRR8749030	Uninduced	1.552
SRR8749031	Uninduced	1.996
SRR8749032	Uninduced	3.727

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.495
SRR8400027	Control - Root	11.295