Gene detail

Gene detail information of Glyur000962s00030564

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16560.3	8.00E-133	Per1-like family protein
NR	XP_004513683.1	0	PREDICTED: post-GPI attachment to proteins factor 3-like [Cicer arietinum]
trEMBL	tr\|A0A072UAB4\|A0A072UAB4_MEDTR	0	Post-GPI attachment-like factor-protein {ECO:0000313\|EMBL:KEH26587.1}

Sequence

Transcript Sequence

>Glyur000962s00030564.1
GTCATTTGCTGCTGCCAATAGTAAACTAAAATGATAAAATAATAATAATGCTGCTTCTGTGAGAGATATCATCATCACCTCACGAGATTCTCTGGTCCTCCTGTTTTCAGTTTCAGCTTCTTCCCCTAAATTAGTCCCCACCACCCACCACTCCCCCAACTCGCTCCGAGTTGACTCGACTCGACTCCTCCCTTTCTAGATCAACCGCCGTTAATGTAAACCCCGACCACCACCCTCCTCCTCCTCCGTCAATGGAAACCTCGCCGTCGATTCTCGCCGGAACCTTCCCTTTGACTTCACTTCTCCCGCGAAATCCGATGGCTCCCCTTCGCTCTCTCCTTCTCCTCGCCGCCCTCTTCTCCCTCCTCCACCCCCTCGCCGCCACCGACGGTGACGCCGATCCGATTTACAGAGGTTGTGTAGAACAGTGCGAGAAAACTGGATGTGTAGGGGATAGATGCTTTCAACATTGTAAATTCTCATCAGATGGAAAACCAATCGATGGTCCATGGTATATGCATGAACCCCTTTACCTGAGGTGGAAACAATGGGACTGTCGCACTGACTGTAGGTACCACTGCATGCTAGCTAGAGAGGAAGAANGAACAAAGCTTGGTGAAAAGCCTGTCAAGTATCATGGAAAATGGCCATTTCGGCGCGTTTATGGAATTCAGGAACCTGTGGCTGTTTTTCTGTCTGCCCTTAATCTTGCTATGCAGTTTCAAGGATGGGTATCCTTTTTCATTCTTGTGTACTACAAGTTGCCGCTGAGGCCAGATAAGAAGACTCACTATGAGTACACCGGCTTGTGGCATATCTATGGGATTCTATCCATGAATTCATGGTTGTGGAGTGCTGTTTTTCATAGTAGAGCTGTGGAATTAACAGAGAAGCTGAATTATTCTTCTGCTGTGGCCTTACTTGGATTTTCCCTCATTCTAGCAATACTGCGAGCNTTTAATGTGAGGGATGAGGCTACAAGAGTCATGATTTCTGCTCCTTTGGTTGCTTTTGTGACAACTCATATCATGTATCTGAATTTCTACGAGCTTAATTATGGTTTGAACACGAAAGTTTGCATGTTAATGGCTGTTGCCCAGCTTCTCATTTGGGCAATTTGGGCCGGTGTTTCTAGCCATCCGGCACGACGGAAATTATGGGCAGTGGTGGTGGGAGGAGGCCTAGCTATGCTCATGGAGACATATGACTTTCCACCTTACATGGGGTATGTGGATGCTCATGCTCTATGGAATGCAGCAAACATCCCTCTCACATTCCTTTGGTGGAGTTACACAAGGGATGATGCTGAGTTTAGAACCACTGCTCTCCTTAAGAAAGTNAAATAGTGTTGTTGTTGGTTGACCCCTAATGGCCATTCTGGTGGATCAGATGAAGGGACACATGCTGCTGCTGCTGCCGCCATATGCTTACCTTGATTTGTACATCAGAACTCTCTCTTTCATTTTCCTCGTGTGAGGGGCATTTATTTGAAAATGCCTTAACACGATGGTTTTCTGTGTTTTTTGTCTTTGTAACTTATGTTTTCCTCCTTGTATGAGGCATACTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00962	60989	66924	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000962s00030564.1	PF04080.8	Per1	90	352	3.80E-85

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	74.227
SRR1783600	control	73.686
SRR1783602	moderate drought stress	67.917
SRR1811619	moderate drought stress	66.705

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.157
DRR006520	Root Summer glycyrrhizin high producing strain	55.861
DRR006521	Root Winter glycyrrhizin high producing strain	32.282
DRR006522	Root Winter glycyrrhizin high producing strain	31.388
DRR006523	Root Summer glycyrrhizin low producing strain	36.138
DRR006524	Root Summer glycyrrhizin low producing strain	35.283
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.266
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.403

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	69.759
SRR2868004	Drought Stress (root)	65.910
SRR2967015	Control (root)	64.272

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.153
SRR9715740	Leaf	37.259
SRR9715741	Leaf	39.508
SRR9715739	Root	98.255
SRR9715742	Root	72.997
SRR9715743	Root	77.422

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.916
SRR8749028	MeJA induced 9h	38.149
SRR8749029	MeJA induced 9h	23.501
SRR8749030	Uninduced	5.640
SRR8749031	Uninduced	9.516
SRR8749032	Uninduced	21.129

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	62.401
SRR8400027	Control - Root	55.048