Gene detail

Gene detail information of Glyur000962s00030560

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25450.1	0	non-intrinsic ABC protein 8
NR	XP_004513684.1	0	PREDICTED: ABC transporter B family member 28-like [Cicer arietinum]
COG	YP_007319634.1	3.00E-86	ABC transporter related protein [Fibrella aestuarina BUZ 2]
Swissprot	tr\|Q8LPQ6\|AB28B_ARATH	0	ABC transporter B family member 28
trEMBL	tr\|G7ZX38\|G7ZX38_MEDTR	0	ABC transporter B family member {ECO:0000313\|EMBL:AES83776.1}

Sequence

Transcript Sequence

>Glyur000962s00030560.1
CTCCTCTCTTGCTTTTCTTTCTTCAACAATTCTCCTCCTAACTCTTTCTTCTTCACCTTTTCATTCTCAATTCTCAAATTCAATGGCCTCTGCAACAACACTGTGGCATTGCCACTCTCCCCTTTCTTCTTCTTCTTCTTCATCCTTTAGAAGAACTCTAAAACAACCAACAATACTCTCACGCGTTCGCATTCACTCTATTCAATCACCACGCAATTCTTCTCGTCGTCCTTCTAGAACTCTCTCCTCCTTGGCCTCGCCGCCATGTGCCTATGTCACGGGACCCGCATCCGACCCGAATTTCGTCGAACCGGATCCGAAAATTGACGGTTCGACACCGGAAGAGACCGAACCACCACCAAGGGTCATAACATGGGAGCTCCTCTCTATGCTTCTCATGAAGCACAAACTTCGCATCGCTGTTTCGGTTGCATCTCTCTTTGCCTGCACCACCTGTACCCTATCCATGCCCATCTTCTCCGGGCGGTTTTTTGAAGTTCTTATTGGTGCAAGACCTGAGCCATTATGGAGACTGCTCAGTAAAATTGGAATTCTGTATGCCCTGGAGCCACTTTTAACTGTTATTTTTGTTATAAACATGAACATAGTTTGGGAGAAAGTTATGTCAACACTAAGAGCTCAGATCTTTGGAAGAATATTGATTCAGAAGGTTGAGTTTTTTGACAAATACAAGGTAGGTGAACTCACTGGTCTGTTAACATCTGATTTGGGTTCTCTTAAAGATATTGTCAGTGAGAATGTTTCAAGGGATCGTGGATTCAGGGCATTATCTGAGGCAAGCAACTCTACACCAATGAGAAGTCATTGGAACGATATTCATACTCTTTTCTTTATCCCCTCAACTGGCACCAATTCTGGGTATTCTGATGCTCGCGGTTTCCATTTCAATCGTGACAATTCTGTCTACAAGAGATCAACTTTGCCTGTTTTTAAAGCACATGGGTTGGCCCAAGCAGCTATGTCTGATTGTACAGCAGAAACATTTTCTGCTATTCGAACAGTGAGATCCTTTGGTGGAGAAAAGCGCCAAATGTTTACATTTGCTAACCAGGTTTTATCTTTCCAATCGAGTGGGATAAAGCTTGGGACTTTCAAATCTTTAAATGAATCTTTGACTAGAGTTGCGGTTTATATTTCCTTAATCGCATTATATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTGAACTCTCTGTTGGAACCATGGCATCTTTTATTGGATATACTTTTACTATAACATTCGCTGTTCAAGGATTGGTTAATACTTTCGGAGATCTTCGTGGAACTTTTGCTGCCGTCGAGAGGATCAACTCTGTTCTGTCTGGAGTTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAGCTGTGGATGATGAAAACCTTAAATTGTTCTTCTCTAATGGTTCTGCTGGGACAAACCAAAAAANTTATTTGCATTACATGTCAGCATTAAAAACATCTAGCAATTTGCTCAACTTNGCTTGGAGTGGAGATGTTTGTCTTGAAGATGTGCATTTCTCTTATCCTTTAAGACCAGATGTGGAAATCTTATCTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCATTGGTGGGTCCTAGTGGAGCAGGAAAAAGTACAATAGTACAGCTNTTGTCTCGTTTTTATGAGCCAGCAANAGGTTGCATAACAGTTGGTGGAGAGGATGTCCGAACATTTGACAAGACTGAATGGGCCCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTCTGTTTTCGGTGTCTGTCGGAGAAAACATTGCATATGGGCTTCCAGATGACAATGTTTCTAAAGACGACGTGATCAAGGCAGCAAAAGCTGCAAATGCTCATGACTTCATAATTTCACTTCCACAGGGCTATGATACACTTGTTGGCGAGCGTGGAGGCCTACTGAGCGGAGGACAGAGGCAGAGAATTGCTATTGCCCGAGCTCTCCTGAAGAATGCNCCCATCCTTATACTTGATGAGGATGCTCTCAACCATTTGATGAAGGGGAGGACAACGTTAGTAATAGCTCACCGGTTAAGCACAGTCCAAAATGCCTATCAAATTGCACTCTGTTCGGATGGGAGGATTGCAGAACTAGGCACCCATTTTGAGTTATTGGCTAAGAAGGGTCAATATGCCTCACTGGTTGCCACTCAAAGGCTTGCATTTGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00962	36563	43302	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000962s00030560.1	PF00664.18	ABC_membrane	122	227	3.70E-10
Glyur000962s00030560.1	PF00664.18	ABC_membrane	280	395	5.20E-14
Glyur000962s00030560.1	PF00005.22	ABC_tran	502	650	3.80E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.122
SRR1783600	control	3.214
SRR1783602	moderate drought stress	2.931
SRR1811619	moderate drought stress	2.966

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.636
DRR006520	Root Summer glycyrrhizin high producing strain	3.647
DRR006521	Root Winter glycyrrhizin high producing strain	3.506
DRR006522	Root Winter glycyrrhizin high producing strain	3.531
DRR006523	Root Summer glycyrrhizin low producing strain	1.785
DRR006524	Root Summer glycyrrhizin low producing strain	1.714
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.856
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.882

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.917
SRR2868004	Drought Stress (root)	9.560
SRR2967015	Control (root)	8.279

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.838
SRR9715740	Leaf	11.446
SRR9715741	Leaf	9.173
SRR9715739	Root	1.376
SRR9715742	Root	4.641
SRR9715743	Root	3.415

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.072
SRR8749028	MeJA induced 9h	4.631
SRR8749029	MeJA induced 9h	3.864
SRR8749030	Uninduced	4.374
SRR8749031	Uninduced	3.961
SRR8749032	Uninduced	5.282

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.359
SRR8400027	Control - Root	9.719