Gene detail

Gene detail information of Glyur000962s00030557

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12580.1	2.00E-153	phosphoenolpyruvate carboxylase-related kinase 1
NR	AGI78245.1	0	phosphoenolpyruvate carboxylase-related kinase 1 [Caragana korshinskii]
COG	YP_007120134.1	3.00E-28	protein kinase family protein [Microcoleus sp. PCC 7113]
Swissprot	tr\|A5A7I7\|CDPK4_SOLTU	4.00E-94	Calcium-dependent protein kinase 4
trEMBL	tr\|M9RTK3\|M9RTK3_9FABA	0	Phosphoenolpyruvate carboxylase-related kinase 1 {ECO:0000313\|EMBL:AGI78245.1}

Sequence

Transcript Sequence

>Glyur000962s00030557.1
CTCATTTCTCAAAGAAACAACAATTCATTTCTCATTTCTCAGAGAAACAACACAGTTCAAATAGGAAGGAAGGAGGATTCATACATTAAACTAAATTAGAAGTCGGCGTTGGAGTCCGAGGAAACGGCCCTTCCAATTTCAAAAGCACAAAACCAAACAAAGCATGTTTAAGCCAACACAGCAACAACAATAACACTCAAAGTTGGTGGTGTTATTGCTATTGCTACTTGTGTTGCTGTTCAGAGCCTCAAACAGCGCACACACACACACACACACACGAGGTCCCTCTATGGAGCCCATGGTTGAGAAGAGCTCAACCACTGCTCCAACGGTCTCCCTCTCTCTCCTTCTTTCTCTCTACTCCACCACCTCCTCAAGTCAAGCCCTTTCTTTGCAACCGATCAGCTGATTTGGAGAAAAAAGGGAGATAGGTGGTCCTGAGTCCCTTTGTAAAATTATCAACCTTTGTTATACTGGTTCACACATTTTGACTCTGAGGTGGTGGAGGGGTTTTGGTGTGTAAGCAAGAAAACTAAAGGTTGACATTTTTGTGTGTGTTTGATTTTGTCAAAGAGGAGGCCTGGTGGTGGTGTCTTCTGAACCANAAGTTTTAACAATTCAACCAGAGTTTTGTTAGGGTCATTAAATTAAGGTGTTGCTGATAGATTATTTCTGGGTTTGTTGAGGAGGGTGAGAGGGTTATTGGTATGGCTGTTGTTGCCAAGAGCAACAGCTGTGCTGAACCTTGTACTTCATACAATTGTTACAAAGTAGCAGGCTTGAGTGAGACCATATTGGACACAAACCATACCTCTAATTTGAAAGATAGGTACATTCTTGGGGAGCAGTTGGGTTGGGGACAATTCGGTGTCATAAGGGTATGCTCGGACAAGTTAACCGGAGAGGCTTTGGCCTGCAAATCGATTGCTAAAGATAGGTTGGTTACTTTGGATGATCTGAGGAGTGTGAAACTTGAGATCGAGATAATGGCTAGGCTATCTGGGCACCCAAATGTCGTGGACCTCAAGGCGGTTTATGAGGAGGAACATTTTGTTCATTTGGTGATGGAGCTTTGTGCGGGAGGAGAGCTGTTTCATCGGTTAGAGAAGCATGGACGGTTTTCTGAATCTGAAGCAAGGGTTCTCTTTAGGCACCTAATGCAGGTGGTTTTGTATTGTCATGAGAATGGGGTTGTTCATAGGGATTTGAAGCCTGAGAACATTCTCTTAGCGACGAGAGCCTCCTCGTCTCCAATCAAATTGGCAGATTTCGGGCTTGCAACCTACATTAAGCCCGGACAGAGTTTGCACGGGTTAGTTGGGAGTCCATTCTATATAGCTCCAGAAGTATTGGCCGGTGCATATAACCAGGCGGCTGATGTGTGGAGTTCAGGGGTTATTCTTTACATTCTGTTGAGTGGGATGCCTCCGTTTTGGGGGAAGACCAAATCGCGCATATTTGAAGCTGTTAAGGCAGCTGACCTGAGATTCCCATCAGAACATTGGGATCGCATTTCTGAATCAGCTAAAGATTTGATCCGGGGAATGTTGTGTACAGAATCTTCTCGAAGGCTAACCGCGCAAGAGGTTTTAAATCATTGCTGGATGGATAGCAATCAAACAAATCCTGAACAACTAAGTGAATATAAAATCCGAAGTTGTGAAGAATGGGGTGTTGGTGGCGGCTCATTCTCTTCCTCTTTTATGTCCAGGAATCAGGACATCAGCTTTGGAACTGGATCACCAACCTGTGATGCTCAATCCCCTACATTCACATGCAGATCATCGTTCTCTTCTTTTCTGGCGGAACCAGTGACTCCTTGTTTAGTTTCCGGTGGCGGCGGGTTTTCATTTCAGAGCGCAGGCGATTCTGCCGGTTTGGAATTTTCCACACCTGTTCCCTCCATGCTCAGCTTTTCATTTCTTAGCCCCAGTTCTGCCGTTGAGCAAAAGAGTTGTAAATTAGAGTGCTCGGCTAACATGTCAGATGTAAATGCAATTGCTGGAGAACGCAGGCCTACAGAGGCGAAAAGGGCAGGTGGAATGAATGGACATAGAGCATTTGGAATGCACAGTAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGTACAACTTGATCTCGTGGTGACTGAATCGGTCATCCGTTGGTCATCATGCACTCAACTCCCTACATCTTTGAGATCTTCTCTTGTCTGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00962	25103	28897	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000962s00030557.1	PF00069.20	Pkinase	43	300	2.20E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.698
SRR1783600	control	16.369
SRR1783602	moderate drought stress	27.522
SRR1811619	moderate drought stress	27.444

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.492
DRR006520	Root Summer glycyrrhizin high producing strain	23.120
DRR006521	Root Winter glycyrrhizin high producing strain	17.676
DRR006522	Root Winter glycyrrhizin high producing strain	16.662
DRR006523	Root Summer glycyrrhizin low producing strain	35.351
DRR006524	Root Summer glycyrrhizin low producing strain	35.425
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.559
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.499

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.243
SRR2868004	Drought Stress (root)	38.845
SRR2967015	Control (root)	42.367

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.805
SRR9715740	Leaf	14.953
SRR9715741	Leaf	14.104
SRR9715739	Root	28.020
SRR9715742	Root	32.188
SRR9715743	Root	28.427

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.499
SRR8749028	MeJA induced 9h	15.833
SRR8749029	MeJA induced 9h	8.361
SRR8749030	Uninduced	6.344
SRR8749031	Uninduced	4.149
SRR8749032	Uninduced	3.687

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.810
SRR8400027	Control - Root	32.922