Gene detail information of Glyur000961s00028339.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10470.1 | 3.00E-57 | response regulator 4 |
| NR | XP_003613423.1 | 3.10E-101 | Two-component response regulator ARR3 [Medicago truncatula] |
| COG | YP_007102288.1 | 5.00E-15 | response regulator receiver protein [Pseudanabaena sp. PCC 7367] |
| Swissprot | tr|Q9ZWS9|ARR3_ARATH | 4.00E-76 | Two-component response regulator ARR3 |
| trEMBL | tr|G7K5L8|G7K5L8_MEDTR | 1.00E-101 | Two-component response regulator ARR3-like protein {ECO:0000313|EMBL:AES96381.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00961 | 96862 | 98200 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000961s00028339.1 | PF00072.19 | Response_reg | 22 | 143 | 6.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.556 |
| SRR1783600 | control | 2.286 |
| SRR1783602 | moderate drought stress | 8.756 |
| SRR1811619 | moderate drought stress | 8.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.978 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.874 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.695 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.666 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.028 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.005 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.385 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.756 |
| SRR2868004 | Drought Stress (root) | 14.166 |
| SRR2967015 | Control (root) | 31.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.934 |
| SRR9715740 | Leaf | 1.200 |
| SRR9715741 | Leaf | 0.950 |
| SRR9715739 | Root | 2.932 |
| SRR9715742 | Root | 3.920 |
| SRR9715743 | Root | 6.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.848 |
| SRR8749028 | MeJA induced 9h | 0.335 |
| SRR8749029 | MeJA induced 9h | 0.576 |
| SRR8749030 | Uninduced | 0.336 |
| SRR8749031 | Uninduced | 0.141 |
| SRR8749032 | Uninduced | 0.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.693 |
| SRR8400027 | Control - Root | 19.141 |