Gene detail information of Glyur000961s00028335 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10460.1 | 2.00E-63 | germin-like protein 7 |
| NR | NP_001241459.1 | 1.56E-129 | germin-like protein subfamily 1 member 1-like precursor [Glycine max] |
| COG | YP_005057816.1 | 8.00E-06 | cupin [Granulicella mallensis MP5ACTX8] |
| Swissprot | tr|P92998|GL11_ARATH | 1.00E-78 | Germin-like protein subfamily 1 member 1 (Precursor) |
| trEMBL | tr|C7S8B9|C7S8B9_SOYBN | 6.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G04450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00961 | 80076 | 80735 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000961s00028335.1 | PF00190.17 | Cupin_1 | 64 | 210 | 4.50E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.799 |
| SRR1783600 | control | 2.761 |
| SRR1783602 | moderate drought stress | 1.924 |
| SRR1811619 | moderate drought stress | 2.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.686 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.836 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.451 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.562 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.910 |
| SRR2868004 | Drought Stress (root) | 11.152 |
| SRR2967015 | Control (root) | 12.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.628 |
| SRR9715740 | Leaf | 0.341 |
| SRR9715741 | Leaf | 0.973 |
| SRR9715739 | Root | 0.122 |
| SRR9715742 | Root | 33.343 |
| SRR9715743 | Root | 28.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.068 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.020 |
| SRR8400027 | Control - Root | 7.392 |