Gene detail

Gene detail information of Glyur000961s00028333.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70090.2	2.00E-146	glucosyl transferase family 8
NR	XP_003613432.1	0	Glycosyltransferase CAZy family GT8 [Medicago truncatula]
COG	YP_007062961.1	5.00E-18	LPS:glycosyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|O04536\|GATL9_ARATH	0	Probable galacturonosyltransferase-like 9
trEMBL	tr\|G7K5M7\|G7K5M7_MEDTR	0	CAZy family GT8 glycosyltransferase {ECO:0000313\|EMBL:AES96390.1}

Sequence

Transcript Sequence

>Glyur000961s00028333.1
GAGAAACCACAAAACCCAAACCCAAAACNGCGTTTTCTTTCTCTCTCAAAACCCCACCCAACAAAACAAGAAAGAAAGAAAGAAAAAAAGGCAAGAAGAAAGAAAGAAAGGAAATGGCAATGTAACTCGACCCATTGATTTCCCTCCATCAAGAATTGATTTTGCCACCGACCCACGAACCACAAGATGCTTTCCCTCCGGTTAAGCGCCATAGTTCACTCCCTCATAGTGTGCACCCTCTTCCCACCTTTCTGCCTCGGGATCCGCTCCTTCCCGACCGCCGTTGCCGGCGCCGGAGACTACCCATTCCAATTCTCCGAGGCGCCGGAGTACCGAAACGGAGCGGGTTGCCCCGTACCNGGAAACCGAAACTCTGTCCTCTCATGCGACCCATCCCTTGTCCACATCGCAATGACCCTCGACTCCGGCTACCTCCGCGGCTCCATCGCCGCCGTCCACTCCGTCCTCCGCCACTCCTCATGCCCGGAAAACTTCGACCCGGCGAGTCCACGAGTCCTGACCCGGTTAGTCCGATCCATTTTCCCTTCTCTGAACTTCAAAGTTCACATCTTTCGTGAAGACACAGTCATCAACCTAATCTCCTCGTCAATCCGTCAAGCCTTAGAGAACCCATTGAACTACGCCAGAAACTACCTCGGCGACATGCTTGACCCGTGCGTTGACCGGGTCATCTACCTCGACTCCGACGTGGTCGTGGTCGATGACGTCAGCAAGCTCTGGCGCGTGTCACTCACCGGGACACGTGTCATCGGTGCCCCCGAGTACTGCCACGCCAACTTCACGAAATACTTCACCGACGAGTTCTGGGTCGACCCGGTTCTGTCGCGCGTGTTCGCCACGCGCAGGCCCTGTTACTTCAACACGGGCGTGATGGTGATGGACTTGGTTAGGTGGAGGGAAGGGAACTATAGGAAGAGGATTGAGAACTGGATGGAACTGCAGAAAAAGAAGAGGATTTATGAATTGGGTTCTTTGCCTCCTTTTTTGCTTGTTTTTGCTGGGAATGTTGAGGCTATTGATCATAGGTGGAACCAACATGGGCTTGGTGGGGATAACGTGAATGGGGTATGTAGGTCATTGCATCCTGGCCCTGTTAGTCTTTTGCATTGGAGTGGTAAAGGGAAACCTTGGGTTAGGCTTGATGCTAAAAAGCCTTGTCCTTTGGATCGTCTTTGGGAGCCTTATGATTTGTATAAGCCACGACAGTTTCAGAATAGAGAGGGTTCTAATAAGGATAACCAGATTCAGAATTGGCCTTTCTCTTCTTCAATATTGGTTGGATATGCTCATGATTTGTTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00961	76798	78147	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000961s00028333.1	PF01501.15	Glyco_transf_8	73	325	6.00E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.471
SRR1783600	control	13.594
SRR1783602	moderate drought stress	9.174
SRR1811619	moderate drought stress	9.039

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.917
DRR006520	Root Summer glycyrrhizin high producing strain	37.456
DRR006521	Root Winter glycyrrhizin high producing strain	2.666
DRR006522	Root Winter glycyrrhizin high producing strain	2.659
DRR006523	Root Summer glycyrrhizin low producing strain	43.887
DRR006524	Root Summer glycyrrhizin low producing strain	43.374
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.775
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.859

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.301
SRR2868004	Drought Stress (root)	32.755
SRR2967015	Control (root)	35.816

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.152
SRR9715740	Leaf	8.271
SRR9715741	Leaf	12.541
SRR9715739	Root	56.821
SRR9715742	Root	84.811
SRR9715743	Root	75.299

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.801
SRR8749028	MeJA induced 9h	26.097
SRR8749029	MeJA induced 9h	32.198
SRR8749030	Uninduced	9.033
SRR8749031	Uninduced	6.128
SRR8749032	Uninduced	12.066

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.733
SRR8400027	Control - Root	32.759