Gene detail information of Glyur000961s00028331 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56860.5 | 7.00E-40 | UBP1-associated protein 2A |
| NR | BAE71253.1 | 1.05E-51 | hypothetical protein [Trifolium pratense] |
| Swissprot | tr|Q9LES2|UBA2A_ARATH | 1.00E-45 | UBP1-associated protein 2A |
| trEMBL | tr|Q2PEU9|Q2PEU9_TRIPR | 4.00E-52 | Putative uncharacterized protein {ECO:0000313|EMBL:BAE71253.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00961 | 49082 | 50071 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000961s00028331.1 | PF00076.17 | RRM_1 | 108 | 167 | 5.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.721 |
| SRR1783600 | control | 10.897 |
| SRR1783602 | moderate drought stress | 15.300 |
| SRR1811619 | moderate drought stress | 13.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.493 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.150 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.616 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.004 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.243 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.614 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.490 |
| SRR2868004 | Drought Stress (root) | 5.601 |
| SRR2967015 | Control (root) | 6.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.383 |
| SRR9715740 | Leaf | 1.879 |
| SRR9715741 | Leaf | 1.611 |
| SRR9715739 | Root | 0.941 |
| SRR9715742 | Root | 2.719 |
| SRR9715743 | Root | 2.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.605 |
| SRR8749028 | MeJA induced 9h | 2.581 |
| SRR8749029 | MeJA induced 9h | 2.325 |
| SRR8749030 | Uninduced | 2.241 |
| SRR8749031 | Uninduced | 0.997 |
| SRR8749032 | Uninduced | 2.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.716 |
| SRR8400027 | Control - Root | 6.895 |