Gene detail

Gene detail information of Glyur000961s00028330

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G70070.1	DEAD/DEAH box helicase, putative
NR	XP_004517036.1	PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Cicer arietinum]
COG	YP_001865310.1	DSH domain-containing protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|B9DFG3\|ISE2_ARATH	DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic (Precursor)
trEMBL	tr\|K7K1N0\|K7K1N0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G04476.1}

Sequence

Transcript Sequence

>Glyur000961s00028330.1
ATAAAGGGAAAAAAAAAAGTGGCAGCGAAAGCAAATCATCTTCTCTCCCGCCATGGCCATCGCTACGAACTCTCAACTTATCCTCTCATCACTCCCACCGCGACTTAACCCTCCTCTCTCTCTCCTCCTTCCCACCACTCTCCCCTTCTCTCTCCTTCGACATCGATCCCTCAGATTCCGTGCCTCCTTCTCCTTCAAGTCCCCAACCTCAACCCTCCGTCCCTTCTCCGACGCCGACGACGAAGACGAACAAGTAGAAGTAGAAGAAGATGATGAGGACTACGACGAAGAGGAAGAGGAAGAGGAAGACGAAGACGTTGCGGCCGATGAATACGACGACGTCGTATCCGGCGAGGTTCCCGACGAAGGCGAGGCGTTCGAGGTTGCTAACGACGCATTGGCTCGGCACGAAGGATTCAAGTGGCAAAGAGTCGAGAAGCTCTGCAACGAAGTTAGAGAGTTCGGCGCTGAAATCATCGACGTCGACGAGCTCGCTTCTGTTTACGATTTCCGAATCGACAAGTTTCAGCGGCTGGCGATTCTAGCTTTTCTGAGAGGTTCTTCGGTGGTGGTTTCCGCTCCGACGAGCAGCGGGAAGACTTTGATTGCAGAAGCTGCGGCGGTTGCCACGGTGGCTAGGGGACGGCGAATATTCTACACGACTCCGCTCAAGGCGTTGTCCAATCAGAAGTTTCGCGAATTCCGGGAGACTTTTGGCGACAGCAATGTTGGCCTTCTTACAGGTGATTCTGCAGTCAACAAGGATGCTCAGGTTTTGATTATGACGACGGAGATATTACGCAACATGTTGTATCAGAGTGTTGGTAATGCTTCTTCTGGAAGTGGACTTGTTCATGTTGATGTGATTGTCTTGGATGAAGTCCATTACCTAAGTGACATATCTCGTGGTACAGTTTGGGAAGAGATTGTTATTTATTGCCCAAAAGAAGTTCAACTTATTTGTCTGTCAGCAACCGTTGCAAATCCAGATGAATTGGCTGGTTGGATTGGTCAGATTCATGGTGAAACAGAGTTGGTGACATCATCAAAACGCCCAGTTCCTCTGACTTGGCATTTCTCTATGAAGAGTTCCTTATTACCACTTCTTGATGAGAAAGGAACACACATGAACAGGAAGCTGTCACTCAATTATTTACAGCTTCAAGCTGCAGGGGTTAAACCTTACAAGGATGATTGGTCTAGAAAAAGGAATTCCCGGAAACGAAGAACTCGCACAAGCTATGATGATGACGATAGCATGTTGGACCAACGCTCTCTTTCCAAGAATAACATAAATGCAATTCGTCGTTCACAGGTTCCTCAAATAATTGATACGTTATGGCACCTTCAGTCTAGGGATATGCTGCCAGCTATTTGGTTTATTTTTAGCAGGAAGGGTTGTGATGCTGCTGTACAATATATTGAAGATTGCAAACTTTTAGATGAGTGTGAAACAAGTGAGGTTGACCTAGCCTTGAAGAGGTTCCGCATTAAGTATCCTGATGCTGTCAGAGAAACTGCNGTGAGAGGACTTTTGAAAGGGGTTGCTGCACATCATGCTGGATGTCTACCTTTATGGAAGGCCTTCGTAGAAGAATTGTTTCAAAGAGGACTTGTCAAGGTTGTTTTTGCCACGGAAACCCTTGCTGCAGGAATCAATATGCCTGCTAGAACAGCTGTTATTTCATCCCTCAGCAAAAGAAGTGATAGTGGACGTACGCTATTAAGCTCAAATGAACTGCTTCAGATGGCTGGCCGTGCTGGACGCAGAGGCATTGACAAAAGTGGCCATGTGGTTCTCATCCAAACTCCTAATGAAGGTGCTGAAGAGTGCTGTAAGGTACTGTTTGCTGGACTTGAGCCTCTAGTGTCACAGTTCACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGTGTGAAAGCCATTCATAGGTCAAACGAATCAGGTGACACAAAACTTTCCTCAGGGAAAACTTTGGAAGAAGCTAGGAAGTTAGTTGAGCAAAGTTTTGGAAATTATGTTAGTAGCAATGTTATGCTGGCTGCTAAAGAGGAACTTAATAAAATTGAAAAAGAAATTGAGTTGCTGATGTCAGAAATCACCGATGAAGCCATAGATAGAAAAAGCAGGAAGGCTTTATCACAGCGACAATACAAGGAGATTGCAGAATTACAGGAAGATTTGAGAGCAGAGAAACGGGTTCGGACTGCATTGCGGAAACAGATGGAAGCAAATAGAATATCTGCCTTGAAACCTTTACTGAAAGAGACCGAAGATGGACATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTCTACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTTGACACCGTTAATGCTTCAAAACTCAAAAACGTGATTGCTTCGGTCGATTCTTTTGCATTAAATTCAACAGATGCAGAGCCAAGTACCGATGATCTTGGACCCTCATATAACGTAGCTCTTGGTTCAGATAACTCTTGGTATCTATTTACCGAAAAGTGGATTAAAACAGTATATGAGACGGGCTTTCCTGACGTTCCATTAGTTCAAGGGGATGCTCGACCTCGAGAAATTATGAGTGATCTCCTTGATAAGGAGGACATGAAGTGGGATAAGCTTGCTCACTCTGAACATGGTGGTTTATGGGTCATGGAAGGATCCCTAGAGACATGGTCTTGGAGCTTGAATGTTCCTGTTTTGAGTAGCTTCTCTGAAAATGATGAGCTGCTACCGAAGTCTCAAGCCTACAGAGATGCCACTGAAAAATACAAGGAACAAAGAAATAAGGTTGCACGCTTGAAGAAAAAGATACCTCGTACTGAAGGCTATAAAGAATATAGTAAAATCATAGACACGGTCAAGTTCATCGAGGAGAAAATCAAGCGACTGAAGACTAGATCCAAACGTTTGATCAATAGGATAGAACAAATTGAACCCTCAGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATACATGAAACCAGAGCTTTGGATATCAATACACATCTCATATTTCCGCTTGGCGAAACTGCAGCTGCAATTCGAGGAGAAAATGAGCTATGGCTAGCAATGGTTCTTCGCAGTAAAATCTTGCTAGAACTAAAACCTGCACAACTAGCTGCNGTGTGTGCAAGTTTGGTGTCGGAGGGTATCAAAGTCAGACCCTGGAAGAACAACACTTATATTTATGAGCCTTCTGCAACTGTAGTCAATGTCATAAGTTTATTGGATGAGCAAAGAAGTGCCCTATTGGCAATTCAGGAGAAACATGGGGTAACCATATCTTGCTGTTTGGATACCCAGTTTTGTGGTATGGTTGAAGCCTGGGCTTCTGGGTTGACATGGAGAGAAATAATGATGGATTGTGCAATGGATGATGGCGATCTAGCTCGACTCCTTCGAAGGACCATTGATCTATTAGCTCAGATTCCAAAATTGTCAGATATTGATCCATTGTTGCAGCGCAATGCAAGGGCTGCTTCTGATGTCATGGACCGGCCTCCAATAAGTGAACTTGCTGGCTAG

Protein Sequence

>Glyur000961s00028330.1
MAIATNSQLILSSLPPRLNPPLSLLLPTTLPFSLLRHRSLRFRASFSFKSPTSTLRPFSDADDEDEQVEVEEDDEDYDEEEEEEEDEDVAADEYDDVVSGEVPDEGEAFEVANDALARHEGFKWQRVEKLCNEVREFGAEIIDVDELASVYDFRIDKFQRLAILAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNASSGSGLVHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGETELVTSSKRPVPLTWHFSMKSSLLPLLDEKGTHMNRKLSLNYLQLQAAGVKPYKDDWSRKRNSRKRRTRTSYDDDDSMLDQRSLSKNNINAIRRSQVPQIIDTLWHLQSRDMLPAIWFIFSRKGCDAAVQYIEDCKLLDECETSEVDLALKRFRIKYPDAVRETAVRGLLKGVAAHHAGCLPLWKAFVEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRSDSGRTLLSSNELLQMAGRAGRRGIDKSGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIHRSNESGDTKLSSGKTLEEARKLVEQSFGNYVSSNVMLAAKEELNKIEKEIELLMSEITDEAIDRKSRKALSQRQYKEIAELQEDLRAEKRVRTALRKQMEANRISALKPLLKETEDGHLPFLCLQYRDSEGVLHSIPAVFLGKVDTVNASKLKNVIASVDSFALNSTDAEPSTDDLGPSYNVALGSDNSWYLFTEKWIKTVYETGFPDVPLVQGDARPREIMSDLLDKEDMKWDKLAHSEHGGLWVMEGSLETWSWSLNVPVLSSFSENDELLPKSQAYRDATEKYKEQRNKVARLKKKIPRTEGYKEYSKIIDTVKFIEEKIKRLKTRSKRLINRIEQIEPSGWKEFMQVSNVIHETRALDINTHLIFPLGETAAAIRGENELWLAMVLRSKILLELKPAQLAAVCASLVSEGIKVRPWKNNTYIYEPSATVVNVISLLDEQRSALLAIQEKHGVTISCCLDTQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQIPKLSDIDPLLQRNARAASDVMDRPPISELAG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00961	41627	48346	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005524 ATP binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000961s00028330.1	PF00270.24	DEAD	158	311	4.60E-23
Glyur000961s00028330.1	PF00271.26	Helicase_C	514	574	1.90E-05
Glyur000961s00028330.1	PF08148.7	DSHCT	996	1161	2.70E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.134
SRR1783600	control	2.073
SRR1783602	moderate drought stress	1.760
SRR1811619	moderate drought stress	1.742

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.026
DRR006520	Root Summer glycyrrhizin high producing strain	2.034
DRR006521	Root Winter glycyrrhizin high producing strain	1.911
DRR006522	Root Winter glycyrrhizin high producing strain	1.908
DRR006523	Root Summer glycyrrhizin low producing strain	1.317
DRR006524	Root Summer glycyrrhizin low producing strain	1.398
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.071
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.182
SRR2868004	Drought Stress (root)	2.755
SRR2967015	Control (root)	4.991

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.380
SRR9715740	Leaf	4.751
SRR9715741	Leaf	3.142
SRR9715739	Root	0.084
SRR9715742	Root	0.713
SRR9715743	Root	0.276

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.064
SRR8749028	MeJA induced 9h	2.943
SRR8749029	MeJA induced 9h	1.882
SRR8749030	Uninduced	1.110
SRR8749031	Uninduced	1.310
SRR8749032	Uninduced	1.184

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.237
SRR8400027	Control - Root	3.136