Gene detail

Gene detail information of Glyur000961s00028329.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G70060.1	SIN3-like 4
NR	XP_006573075.1	PREDICTED: paired amphipathic helix protein Sin3-like 4-like isoform X1 [Glycine max]
Swissprot	tr\|O04539\|SNL4_ARATH	Paired amphipathic helix protein Sin3-like 4
trEMBL	tr\|K7K633\|K7K633_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G03060.2}

Sequence

Transcript Sequence

>Glyur000961s00028329.1
CTCTCTTCTTTCTCTCTGTTCTGTTTGTTTGTCCAGAAAATCGAAGAGAAAATAATTCTCTCTGGAATTCAAACTGAAGGAAGAAAATAAAAACTCGTGTGTTCTCTTCAGCACTTCAACGTTGATACTTTCTGAAGAATCACAAAGGATTTGGCTCCTTCGAGGTGATCTCTTTGTGGAGGTTGAGGTTGGGATTCTTGCTTCTTGTTGATTCCTTGCGGTTAGATCTGAAGTCTTCTCGTTGCTCTTGTTCGAATGAGTAGCTTGAGATGAAGAGGTCAAGAGACGATGTTTTCATGAGTTCTTCTCAACTCAAACGACCCATGATGTCTTCTCGAGGAGAAGCATCGGGGCAACCCCAGATGATGAATGGTGGTGCTCAGAAACTGACTACTAATGATGCCCTAGCATATCTCAAGGCAGTAAAGGATATATTTCAAGATAAGAGGGATAAGTATGATGACTTTTTGGAGGTCATGAAAGATTTCAAGGCACAAAGAATTGATACTGCGGGTGTCATAGCAAGAGTGAAAGACCTGTTTAAAGGGCATAGAGATCTAATATTGGGATTTAACACCTTCTTGCCAAAGGGGTATGAAATCACACTTCCAATGGAGGATGAACCTCCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGATTTCAAGGTGATGATCATGTTTACAAGTCGTTTCTGGACATATTGAATTTGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGACCATGCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACACTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGAAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGCGGCCAATGCATGTTGAAAAGAGAGAAAGGACCATGGTTTCACACGGGGATCGTGACCCCAGTGTTGACCGTCCTGACCCAGATCATGACAGAGGTTTATTGAGGGCAGACAAGGAGCAGAGGAGACGTGTGGAGAAGGAAAAGGACCGTGGAGAAGATAGAGACAGAAGAGAACGAGAAAGGGATGATAGAGATTATGAGCATGATGGGGGACGAGATAGGGAGCGGTTATCCCACAAACGGAAATCTGATCGTAAGGCTGACGAATCTGGAGCTGAACCATTGCTTGATGCGGATCAAAATTTTGGTATGCGCCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTATAGTCAAGAGTTAGCTTTCTGTGATAAAGTCAAAGAGAAATTACGAAATCCTGACAACTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATTGGTGGGTGATTTATTGGGAAAATATCCAGATCTTATGGAGGGTTTTAATGAATTTTTGCTACAAGCCGAAAAGAATGATGGTGGATTCCTTGCTGGTGTCATGAACAAAAAGTCCTTATGGATTGAAGGACATGGACCAAAACCAGTGAAGGCCGAAGAGAATAGAGATAGGGATCGAGATAGAGACCGTTATAGGGAGGATGGGATGAAAGAAAGGGATCGTGAATGCCGTGAAAGGGACAAATCTACTGTGATTTCCAACAAGGATGTTTCAGGATCTAAGATGTCTCTGTATCCCAGCAAGGATAAGTATTTGTCAAAACCAATAAATGAGCTGGACCTTTCTAACTGTGACCGATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCAATAGCTAGCCAGAGAACAGAACTTGGTGCAGAAGTGTTGAATGATCACTGGGTCTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTCGATATGTTGTTAGAGTCTGTAAATGTGGCAACCAAACGAGTAGAAGAGCTGTTAGAAAAGATCAATAGTAATATAATTAAAGGAGACGGTCCAATTCGTATTGATGAGCACTTAACAGCTCTAAACCTTAGGTGTATTGAGCGATTATATGGTGACCATGGGCTTGATGTGATGGAGGTGCTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCTAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACCAAAGCCTTACTGGCTGAAATCAAAGAAATTAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGGCGGCCTATTCTTCCAAACTTGGAGTTTCAATATACTGATCCAGTCATTCATGAAGATTTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTACTCGGCCCCAGGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTCTGTAAAAAGTGGCACTGTAAGTGTTGCNGAAAGTGATGGTAATCCCGGTGTTGGTGCTACCATAATGAACCCAAAGCATATAGATACTGCTAGAAATGGGGATGAGTGTGTGCCATTAGATCAATCAACTTCCAGCAAAGTGTGGCAATCAAATGGTGATACCGGGGTTAGAGAAGATAAGTTTCTTGATTCAGACCGTACTGCACGTAAAACTGAAAATTTGGGCAGTAATACACAACACGGTAAAACGAATATTATTGCATTCACACCTGATGAACTATCAGGAGTCAATAAGCCAGATCAGTCCAGCGAGTGGTTAGTGAATGCTAACATCTCATCAACGTCTGGAATGGAGCAAGGTAATGGAAGATCAAAGATAGATAATGCATCAGGACACACTGCTACTCCATCTAGAAATGGTAATGTATCTGTCGAGGGAGGACATGAATTACCTTCATCAGAGGGTGGTGATTCTACAAGACCAGGTACATCCACAAATGGGGCCATTGCCGGAGGCACTGAAATTCACCAATACCAAGAGGAGTCTGTTCGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCAAATGGAGACTTTGAAGAGGATAATTTTGCAGTTTATGGAGATAATGGTTTGGATGCAGTGCATAAAGGAAAGGATAGTGGTGTGACTCGGCAATACCAAAATAGACATGGGGAAGAAGTTTGTGGTGAAGCCAGAGGAGAAAATGATGCGGATGCTGATGATGAAGGTGAAGAAAGTCCTCGCAGGTCATCGGAGGACAGTGAAAATGCTTCTGAAAATGTTGATGTTTCTGGAAGCGAATCTGCTGATGCTGAGGAGTGTTCTCGAGAAGAGCATGAGGTTGGGGAACATGACAACAAAGCTGAGAGTGAAGGTGAAGCCGAAGGAATGGCTGATGCCCATGATGTTGATGGAGATGGAACGTCATTGCCATTTTCTGAACGCTTTTTACTAACTGTGAAGCCTTTGGCAAAGCATGTTCCCCCTGTGTTACATGAGAAAGACAGGAATTCTCGAGTGTTTTATGGAAATGATTCCTTTTATGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAATTCATCATCTGCTGAAAGGAAATGGAGGGCTTCAAATGATACAAGCTCTACTGTTCAATATGACAGGTTCATGAATTCCCTTTACAGTTTGCTAGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACGTTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGATGAGATGGACAATAAGCTCCTCCAACTATATGCATATGAGAAATCAAGAAAACATGGGAAATTTGTTGACATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCTGGACTAAAGAAACTATCTATTCAACTGATGGACTGTGGACATGATAAGCCTGAAGTGACTGCTGTGTCGATGGACCCTAATTTTTCAGCCTATCTGCACAATGATTTCCTCTCTGTTGTCCCCGACAAAAAGGAGAAGTCAGGGATTTTCTTGAAGAGGAATAAACGTAAATATGCCTGTAGTGATGAATTTTCAAGCCAGGCTTTGGAAGGACTACAAGTTATTAATGGCCTAGAGTGTAAGATAGCTTGCAGCTCTTCTAAGGTGTCATACGTTTTAGATACGGAAGACTACTTGTTTCGGATGAGACGGAAAAGAAAAGCCTTGCATCCAAAGAGTTCATGCCATGAACAGGCAAAGTCTTCAAGCAGAGAACAAAGTAGTATTTTTCAAGCGTCATTGGCAGAGGGGCCAGATGTAAACGACATCCTATCCAAGATGTTTTGAACAAAGATGTTTTTTCTGAAACGATATTTCAACATTTTCTATAAGCAAATCTAATAAAGGTCACAGAAAGGGAGGCGCGGCATGGAGAGGAGGAGATTGTTGTATACCGTAATTTGATGGCTCACAGTAATGTAAATAGGGGGTAATTTGTGATGTAACTAGAGGACATTTTTTTTTTCCTATTCATCCATATTTTTGTTATCTAGTTTATTATTTTTCAGTCCCTTTAGCTGCTACATTGTTGAGGTTATTTTTTTAATGGAACCTTTGGTGGCTGCAATTGGCCTCCAGTTTCAAATACGAAAAGCATACTGCATACTGTGATATGTTTTGGACTCGCAAGCTAAAACAAGAATATATGTAGGGTTCAGAAGCCAATAACCACTAGTCAGAGACTCAAAACTGTTGGAATCTCTCGAGGGCACTATGATTATATTAAAAGTTTCTTATTGAAGGGTGGTGGATGGTTGAATTGGCTCAACATTTATGATTAGAGTAAAATATTATCAGTGGTGTTGTACTTATATAATATCATTTTATCATATTTACTGTTAACATTTCAAGCACCAGATTAATGCGTCACAG

Protein Sequence

>Glyur000961s00028329.1
MKRSRDDVFMSSSQLKRPMMSSRGEASGQPQMMNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKDLFKGHRDLILGFNTFLPKGYEITLPMEDEPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNLYRKENKSITEVYQEVAALFQDHADLLDEFTHFLPDTSAAASTHYASARNSMLRDRSSAMPTVRPMHVEKRERTMVSHGDRDPSVDRPDPDHDRGLLRADKEQRRRVEKEKDRGEDRDRRERERDDRDYEHDGGRDRERLSHKRKSDRKADESGAEPLLDADQNFGMRPMSSTCDDKNSLKSMYSQELAFCDKVKEKLRNPDNYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQAEKNDGGFLAGVMNKKSLWIEGHGPKPVKAEENRDRDRDRDRYREDGMKERDRECRERDKSTVISNKDVSGSKMSLYPSKDKYLSKPINELDLSNCDRCTPSYRLLPKNYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINSNIIKGDGPIRIDEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQDEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPILPNLEFQYTDPVIHEDLYQLIKYSCGEVCTTEQLDKVMKVWTTFLEPMLCVPTRPQGAEDTEDVVKAKNNSVKSGTVSVAESDGNPGVGATIMNPKHIDTARNGDECVPLDQSTSSKVWQSNGDTGVREDKFLDSDRTARKTENLGSNTQHGKTNIIAFTPDELSGVNKPDQSSEWLVNANISSTSGMEQGNGRSKIDNASGHTATPSRNGNVSVEGGHELPSSEGGDSTRPGTSTNGAIAGGTEIHQYQEESVRHFKSEREEGELSPNGDFEEDNFAVYGDNGLDAVHKGKDSGVTRQYQNRHGEEVCGEARGENDADADDEGEESPRRSSEDSENASENVDVSGSESADAEECSREEHEVGEHDNKAESEGEAEGMADAHDVDGDGTSLPFSERFLLTVKPLAKHVPPVLHEKDRNSRVFYGNDSFYVLLRLHQTLYERIQSAKINSSSAERKWRASNDTSSTVQYDRFMNSLYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYAYEKSRKHGKFVDIVYHENARVLLHDENIYRIEYSPGLKKLSIQLMDCGHDKPEVTAVSMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYACSDEFSSQALEGLQVINGLECKIACSSSKVSYVLDTEDYLFRMRRKRKALHPKSSCHEQAKSSSREQSSIFQASLAEGPDVNDILSKMF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00961	28756	40531	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000961s00028329.1	PF02671.16	PAH	60	106	1.20E-16
Glyur000961s00028329.1	PF02671.16	PAH	146	191	2.30E-21
Glyur000961s00028329.1	PF02671.16	PAH	357	402	9.00E-20
Glyur000961s00028329.1	PF08295.7	Sin3_corepress	499	591	2.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.445
SRR1783600	control	12.511
SRR1783602	moderate drought stress	13.119
SRR1811619	moderate drought stress	12.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.267
DRR006520	Root Summer glycyrrhizin high producing strain	16.766
DRR006521	Root Winter glycyrrhizin high producing strain	29.122
DRR006522	Root Winter glycyrrhizin high producing strain	28.659
DRR006523	Root Summer glycyrrhizin low producing strain	20.543
DRR006524	Root Summer glycyrrhizin low producing strain	20.424
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.502

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.544
SRR2868004	Drought Stress (root)	35.673
SRR2967015	Control (root)	37.234

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.405
SRR9715740	Leaf	17.842
SRR9715741	Leaf	21.384
SRR9715739	Root	2.162
SRR9715742	Root	19.260
SRR9715743	Root	16.851

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.799
SRR8749028	MeJA induced 9h	37.950
SRR8749029	MeJA induced 9h	22.970
SRR8749030	Uninduced	24.087
SRR8749031	Uninduced	23.268
SRR8749032	Uninduced	13.874

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.688
SRR8400027	Control - Root	35.704