Gene detail

Gene detail information of Glyur000961s00028327

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	2.00E-179	NB-ARC domain-containing disease resistance protein
NR	XP_004491239.1	0	PREDICTED: putative disease resistance protein At3g14460-like isoform X2 [Cicer arietinum]
COG	YP_001660791.1	8.00E-12	apoptotic protease-activating factor 1 like [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|V5TH04\|V5TH04_CICAR	0	NBS-LRR protein {ECO:0000313\|EMBL:AHB64351.1}

Sequence

Transcript Sequence

>Glyur000961s00028327.1
ATGGCGGCAGCTGTTGTGGGTCAAGCTTTTCTCTCTGCCTTCATTGAAGTGGTCATCGACAGACTCGCTTCTCCTGAGTTTGTCAACTTGATCCGAGGAAAGAAGCTTGACGACAATTTGCTACGAAGGTTGAAGAACACTCTGTATGCCGTGGAAGCCGTGCTGAATGATGCAGAGCAGAAGCAGATTAATGACTTAGCAGTGAACAAGTGGATCGATGACCTCAAAGATGTTGTGTATGATGCTGATGACCTCTTGGATCACATTTCTACTAAAGCTGCAACTCAGAGGAAGGAGGTGAGTACTACTAGTACTAGCTTATTCTCTCGTTTTTTCAACTATCAAGGCAGTGACAGGGAGATGGTCAATAAGTTGGAAGACGTAGTTGGAAGACTTGAATCCATTTTCAAACTCAAAGATATTCTTGGTCTTAAAGAGATTGCGAGGGAGAACTCATCATGGAGAACTCCTTCAACGTCCCTGGAAGACAGATCTGATATATATGGTAGGGATGGAGACAAANANGCCATACTCAAANTGTTGTNGGATGATGAGAAGNGTGATGGTAAAACATCTGTGATCCCCATAGTGGGTATGGGTGGCGTTGGAAAAACCACCTTAGCCCAATCGGTGTACAACGATGACAATATAAAGNAGAAATTTGATCTTCAAGCATGGGNCTGTGTTTCCGATGAATTTGATGTCTTGAANGTTACAAAGANCATCTTGGAGGAAATTACGAGNAGTGCTTGTGGCATACATGGCATAAATTCGCTTCAACTTGATTTGAAGGAAAAGCTGACTGGAAAGAAGTTCTTAATTGTTTTGGATGATGTATGGACCCAGGATTATGACGGTTGGAATTTTCTCATGAGGCCTCTTCAATACGGAGCTGAGGGAAGTAAAATTCTAGTAACAACCCGTAATGAAAATGTTGCTTCTATGGTCCAAACTCTTCAAGGTTGCCACCATCTTGGGCAATTGTCATATGAAGACTGTTGGTCAGTGTTTGTGAATCATGCATGCCTTTCATCAGAGTCTAGTGACAGTACGGATCTCCAAAAAATTGGTAGAGAGATTGTTAGAAAATGTAAGGGATTGCCTTTAGCAGCACAATCACTTGGAGGCTTATTGCGAGGCAAACATGATATCGCATACTGGTATAATGTACTGAATAGTAACATTTGGGAAATTACTGAGAATGAGAGTAAAATCATCCCAGCACTGAGGATTAGTTATCAGCATCTCCCACCATATGTGAAACGTTGCTTTGTTTACTGTGCATTGTATCCTAAGGATTATGTGTTCGATAAAGATAAGTTGATCGTGTTGTGGATGGCAGAAGATCTTTTACGACCTCCAAAAAGTGGAAAGACTTTAGAAGAAGTTGGTCATGAGTATTTTAATGATTTAGCTTCGAGATCATTTTTTCAACGTCACAGGATCTACAGGAGTGGGAACAAGTATTTTGTGATGCATGATCTCGTGCATGATTTAGCAACATCACTCGGTGGAGAATTCTATTTTAGAACAGAAGAACTCCGGAAAGAAACCAAGACTGGTATCAAGACTCGCCATTTGTCATTTAGCAGGTTAAGTGATCCCATCTCAGAAAAATTTGAGATTTTTGGTGGCGGAGTAAAATCTCTGAGGACATTTTTGCCAATTGACTCATTCAGCACTAAAAAGGCATCATTGGTCGTTTTGTCGGGTTTGAAGCGCTTGAGAGTTTTGTCATTTCGCTCGTTTAGAGGTCTTGATCCATTGCCCGATTCAATAGGTGAATTGACCCATCTGCGTTACTTGGACCTCTCTAGCACAAATATAAAGACATTACCAGAGTCATTGTGTAACTTGTATAATCTCCAGACGTTGAAGTTGTATGACTGTTCATGTCTAACTATGCTACCCAATGACATGCAAAATCTCGTGAATTTGCGCCATCTTGATATACGTGGAACTCATAATTTAGAAGAGATGCCTAGAGAAATGAGCAAATTAAATCATTTGCGACATTTGAGTAACTTTATTGTGGGCAAACATGAAGAGCAGGGAATCAAGCAACTGGGAACACTCTCAAATCTTCAAGGATCACTTTCAATTGAGAAGTTAGAGAATGTTACCAATTGCAGTGAGGCACTGGAGGCAAGGATAATGGATAAGAAGCACATTGAGGAATTAAATTTGCAATGGGGGTCAGGAGACAATTTTGACAGTTCCCAAAGTGAAATGGAGATACTTGGCAATTTACAGCCTCCCCAGAACCTGAAAAGGCTAACAATACATGCATACAGGGGCACGAGATTTCCAGAATGGGTTGGACTTCCTTCCTACGGTAGCATGACTAGGCTATCTCTATTTCATTGTCGGAATTGTTGTACCCTTCCACCACTTGGGCAATTACCCTCTCTCAAGGAATTGACTATTTCTAAGTTGGATATGCTGCAGAGTATTGGATATGAATTTTTCAAGAATGGTGATTCCTTTTTAGGGAAACCCTTTCCCTCCCTTGAAAATTTGGAGTTTAATGAAATGTCGAGTTGGGAGGTGTGGCATCATCCCGTCGAGTCAGATGCTTTTCCTGTACTAAAGTCCCTTATATTACGTGATTGTCCCAACTTACGTGGAGATTTGCCAACTCACCTTCCTGCCCTGAAAACAATTGAGATTGTAGAATGCGGCCAACTTGCTTCTTCTATCCCACGGGCTCCTGCCATCCGCGAACTACAGATACGNAGNAGCAATAAAGTAGCCTTACGGGAGTTAGAAGATGTGACGATAGGTGGTTGCCTAGAAATTGAGACGTTTCTTGATGGGTGTCTGCCGCCTAGCTTGAGATCACTTGGGATCGAGAACTGCGACAAATTACCGAGGAGCCCATCTCTTACTTCGTTGGACATGCTTTCCGAGTTTATCATCGTAGGTCCATGTGATGGTGTCGAGTGCTTCCCCGAGGAGGGAACCATTACAGAAATTTTTGCTATGGATGGCTAAACGAAGTTACTTGTTGAATAAATACATCAATCGGCTTCACACTACAGTCATGGGATTTGAGAACAACGACAAAAGAGCTTGAGTTGACATAATTATGTAGGTTTACAAAAGGGATGTTATTGGCACAGCCCTGTCNGTTATTCAATCCAACACAACAGCTGCTACATTCTTGGCCTCAGTTTCTTTGACTCNGTGTTCTCTTATTGGAGCCTGGATTGCCAATAGCTCCAATATTTTNTTCCAGAGTCAATTAATCTATGGTGACAGTACAAGGGCAACCTCCATTTCCATCAAGTACAATCAGCAAGGCACTTTTTTCCTCCTTGCTTTCTCATGCTTCATTCAATCAGCAAGGCATTTTCTTCCANCCCTCTATTTTGCTCTTTTTTACGTTTGTGATACCTCTATTTTGCTCTTGACTTGGTGCTATGGTTTTTTAGGCAAATGATAAGAGCATGACAAGTGGATCAAAAATTCCCANCCCACACTTATGGTGAATTAATTATTACACCCAAGTCTAAGGTTTTTGGTATACTAATAATCGGTTCAAAAAATATGAATGACAGCAAATTCTTTTGTATTTACTTCCTTTGCAGTAAACATTTGTGTATTTTTAAGCCATCAAGAAAAACTTACNAAAAAAATAACTANTAGTATTTTTCCTGTTCCTTGCAGTTTGTTGTAGAAGGGGGCACTCCATTCATAGAACTGCAGAGTCACAATAATTATTTTATTTCGCGTTTTAAGGTAAGGATTATCCAAGCATATATAGATCTCATTATTTTTGTGGCCAGAGGATATAGTTAATAGTATGACAAGGAAGTCGTTTGCTCTTAAAAATATAATGTGCTTTCTGTTTTACAAACATCTCTCAGAAATTAAAGTGGCTGTCTACTTTTAAATCAAAGGAAGGATAAGGATTACTTGCCTACATAATTATGTCAACTCAAGCTCTTTTGTCGTTGTTCCCATATCCCATGACTGTAGTGTGAGGCCGATTGATGTATCTGTAAAGCAGAAAGAGGTGATAAGCAAACATGATTAGCAACCCGGCCGCAAGGGACCAAAACCAGGTACTCCTTATGGAAAATTCATATTTCAACTTGTTCCTTTCTAGGAATCCTAATTGAGAAGTATATAGTGGAGGACTGAGTTTTTTTATGAAGGACTTCAGTTATAAACAAATACACTAAGTGGAGTCCAATGTCATCAGTCAAATTAACATTTAATTTGCTTGATGGGCCATTGACTTATTAACTCGTAATTATTGGCAACCAATTGCAACTTGCTATAGTATAAGGATAATATCATTCCAAATTAGGCTTATAAAAAGCACCTTATTTCATCATCCCACAAGTCTAACAGTCTACAGCAAGTCAGAGAACATTCAATGACATACATAAGCAGTAAACATTAGACAAAAATTAAATTTTTTTGTCATAAAAGAATTGAAATGAATTACCCATTTATTCAACAAGTAACTTTGTTTGGCCATCCACAGTAAGAAGTTCTGTAATGGTTCCTGCGATTGAAGAATATGTCAATCATCTGAAAGAAATTAATAGCTGGAGTCGTTTTAGTTAAAGTTTGAACTTTTGATGTCGATTTCTTTTCCAGAAATATTTGTACAAAAAATTGGCACCAGAATGTAAAACACAAGATGCAAATAATCAGTTTAGTGGAAGCACCATCCTCTCCATGAAAAAGTATGCCAGTTAAACTATCTATTACATTAGAGGGGAAGTTTATGAACTCACATGGTTGTACAAACCAAAGCCAGCATCATTGATATTCCCAGTATATTAATCAG

Protein Sequence

>Glyur000961s00028327.1
MAAAVVGQAFLSAFIEVVIDRLASPEFVNLIRGKKLDDNLLRRLKNTLYAVEAVLNDAEQKQINDLAVNKWIDDLKDVVYDADDLLDHISTKAATQRKEVSTTSTSLFSRFFNYQGSDREMVNKLEDVVGRLESIFKLKDILGLKEIARENSSWRTPSTSLEDRSDIYGRDGDKXAILKXLXDDEKXDGKTSVIPIVGMGGVGKTTLAQSVYNDDNIKXKFDLQAWXCVSDEFDVLXVTKXILEEITXSACGIHGINSLQLDLKEKLTGKKFLIVLDDVWTQDYDGWNFLMRPLQYGAEGSKILVTTRNENVASMVQTLQGCHHLGQLSYEDCWSVFVNHACLSSESSDSTDLQKIGREIVRKCKGLPLAAQSLGGLLRGKHDIAYWYNVLNSNIWEITENESKIIPALRISYQHLPPYVKRCFVYCALYPKDYVFDKDKLIVLWMAEDLLRPPKSGKTLEEVGHEYFNDLASRSFFQRHRIYRSGNKYFVMHDLVHDLATSLGGEFYFRTEELRKETKTGIKTRHLSFSRLSDPISEKFEIFGGGVKSLRTFLPIDSFSTKKASLVVLSGLKRLRVLSFRSFRGLDPLPDSIGELTHLRYLDLSSTNIKTLPESLCNLYNLQTLKLYDCSCLTMLPNDMQNLVNLRHLDIRGTHNLEEMPREMSKLNHLRHLSNFIVGKHEEQGIKQLGTLSNLQGSLSIEKLENVTNCSEALEARIMDKKHIEELNLQWGSGDNFDSSQSEMEILGNLQPPQNLKRLTIHAYRGTRFPEWVGLPSYGSMTRLSLFHCRNCCTLPPLGQLPSLKELTISKLDMLQSIGYEFFKNGDSFLGKPFPSLENLEFNEMSSWEVWHHPVESDAFPVLKSLILRDCPNLRGDLPTHLPALKTIEIVECGQLASSIPRAPAIRELQIRXSNKVALRELEDVTIGGCLEIETFLDGCLPPSLRSLGIENCDKLPRSPSLTSLDMLSEFIIVGPCDGVECFPEEGTITEIFAMDG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00961	2241	9715	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000961s00028327.1	PF00931.17	NB-ARC	173	452	3.00E-74
Glyur000961s00028327.1	PF13855.1	LRR_8	597	654	6.50E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.483
SRR1783600	control	4.628
SRR1783602	moderate drought stress	8.202
SRR1811619	moderate drought stress	8.505

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.138
DRR006520	Root Summer glycyrrhizin high producing strain	3.968
DRR006521	Root Winter glycyrrhizin high producing strain	3.397
DRR006522	Root Winter glycyrrhizin high producing strain	3.320
DRR006523	Root Summer glycyrrhizin low producing strain	3.581
DRR006524	Root Summer glycyrrhizin low producing strain	3.662
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.972
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.037

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.775
SRR2868004	Drought Stress (root)	10.945
SRR2967015	Control (root)	8.836

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.875
SRR9715740	Leaf	4.165
SRR9715741	Leaf	2.269
SRR9715739	Root	2.142
SRR9715742	Root	1.963
SRR9715743	Root	1.692

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.326
SRR8749028	MeJA induced 9h	6.112
SRR8749029	MeJA induced 9h	2.482
SRR8749030	Uninduced	2.576
SRR8749031	Uninduced	1.333
SRR8749032	Uninduced	0.698

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.902
SRR8400027	Control - Root	10.585