Gene detail

Gene detail information of Glyur000960s00023959

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06680.1	1.00E-94	photosystem II subunit P-1
NR	AFK44592.1	1.59E-153	unknown [Lotus japonicus]
Swissprot	tr\|P16059\|PSBP_PEA	7.00E-150	Oxygen-evolving enhancer protein 2, chloroplastic (Precursor)
trEMBL	tr\|I3SWF0\|I3SWF0_LOTJA	6.00E-154	Uncharacterized protein {ECO:0000313\|EMBL:AFK44592.1}

Sequence

Transcript Sequence

>Glyur000960s00023959.1
AATTAAAGTCCATGCTCACACAAGATAAGCCCATGCTTGAACAAAATCGAGCTCTCGAACACACCACACAACAAGTCATAACAATGTGCTTTTTAACACAAGAAACCCCAAAAACTATAGCTGTGGCAAGAGGAAAAATGAAAGCACACAAGTTGCCATGTGGAACCAATCAGAGCCCCTACAACCTTATCCCACATCAGAAATGCAATCAAATGTTACCAATCATCCACATCCAAATCCAATATCCATAAACATAGCCACATGTTCATTGCCACATCACCCACCCCACAATCTAAAGCCAATTCAAACAAATCCCACACACACACACACTCTTTGCCTACTCTATACTGTCTCTTGATTCACAGGGCTATAGACTGTGAGACTGAGAGAGCACAATGGCCTCTACCCAGTGTTTGTTGCACCACCATGCCCTCACAACTCCAACCAGAAACTCACCACAGCGCCAAATCGTGAGCACCAAGCCAAACCAGATCGTGTGCAAGGCACAACAGAAGCAAGAAGATGTGAGTGTTGTCTCTCGCAGATTAGCTCTCACAGTTCTCATTGGTGCTGCTGCTGTTGGCTCAAAGGTCTCACCTGCTGATGCAGCCTATGGAGAAGCTGAAATTGTAATTGAAAGAATGAGGTTGGTGAGGATTAAGAGTGGATTCAAACTGTCGATTCCCGCAAAGTGGAATCCAAGCAAAGAGGTTGAGTACCCAGGTCAGGTTCTTAGATATGAGGATAACTTTGATTCAACCAGCAATGTTACTGTCATGGTCACTTCAACTGACAAGAAGTCCATCACTGACTATGGTTCACCCGAGGAGTTCCTATCGCAGGTGGACTATTTGCTTGGAAAACAAGCCTTCTTTGGCCAAACTGATGCTGAGGGCGGTTTCGATGCGAATGCCGTAGCGGTTGCAAACATCTTAGAGAGCTCAGCACCAGTGATTGGTGGGAATCAGTACTACAACTTGTCGGTGTTGACAAGGACTGCTGATGGAGATGAAGGTGGGAAGCACCAGCTGATTACAGCAACCGTAAAAAATGGCAAACTGTACATTTGCAAGGCTCAAGCTGGAGACAAGAGGTGGTTCAAGGGGGCAAGAAGGTTTGTGGAGAGCACTGCAAGCTCTTTCAGTGTTGCCTAGCTATTATAAGAACTTAANTTAGTGGAGGGTTGTTAATTACTCTACTGCATGTAAATCATGTTCTTGGAGTTGTCTAGTNCCTTTTTGTCTCCAAGTTTTCATTAAGATGGATGGTTGGAGTATAAGCACTTTTGGTTCTTAATTTTTCATGCTTTTAAGGCCTCCCTTCCCCCACCCCCCTGCTCTCTAATTAAGCATTTTAAGTTGCCAGATGCCATTGAGAAGCACTACTATATATATGCTTAATAAAGGGTTCATGGTTTGTATACAAAATGCTTAAAATATTTTATTAAAGAGGTCAGGAGGAAATCCTATCTTAAGGGATGTAGTAATGGGTTGGTTACAATTGATTAATAANGGGTTCAAGGGTATGTTTACAATTGGTTGGTTGATTAGGTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00960	69719	72715	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000960s00023959.1	PF01789.11	PsbP	88	252	2.10E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.324
SRR1783600	control	0.335
SRR1783602	moderate drought stress	0.430
SRR1811619	moderate drought stress	0.479

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.808
DRR006520	Root Summer glycyrrhizin high producing strain	2.824
DRR006521	Root Winter glycyrrhizin high producing strain	0.126
DRR006522	Root Winter glycyrrhizin high producing strain	0.115
DRR006523	Root Summer glycyrrhizin low producing strain	6.119
DRR006524	Root Summer glycyrrhizin low producing strain	6.526
DRR006525	Leaf Summer glycyrrhizin high producing strain	1301.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	1297.086

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.487
SRR2868004	Drought Stress (root)	24.017
SRR2967015	Control (root)	11.391

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1091.185
SRR9715740	Leaf	1241.028
SRR9715741	Leaf	973.130
SRR9715739	Root	1.280
SRR9715742	Root	7.782
SRR9715743	Root	6.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.900
SRR8749028	MeJA induced 9h	17.293
SRR8749029	MeJA induced 9h	9.573
SRR8749030	Uninduced	3.949
SRR8749031	Uninduced	0.725
SRR8749032	Uninduced	8.231

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.376
SRR8400027	Control - Root	21.310