Gene detail information of Glyur000960s00023958 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10260.3 | 4.00E-88 | Reticulon family protein |
| NR | XP_004499535.1 | 1.09E-144 | PREDICTED: reticulon-like protein B8-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9SS37|RTNLH_ARATH | 1.00E-109 | Reticulon-like protein B8 |
| trEMBL | tr|K7MRE4|K7MRE4_SOYBN | 4.00E-144 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00960 | 63437 | 65607 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000960s00023958.1 | PF02453.12 | Reticulon | 71 | 231 | 4.80E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.329 |
| SRR1783600 | control | 9.129 |
| SRR1783602 | moderate drought stress | 22.401 |
| SRR1811619 | moderate drought stress | 22.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.563 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.347 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 84.759 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 82.959 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.517 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.789 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.941 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.384 |
| SRR2868004 | Drought Stress (root) | 65.124 |
| SRR2967015 | Control (root) | 60.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 53.568 |
| SRR9715740 | Leaf | 52.121 |
| SRR9715741 | Leaf | 78.419 |
| SRR9715739 | Root | 18.638 |
| SRR9715742 | Root | 30.636 |
| SRR9715743 | Root | 28.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.704 |
| SRR8749028 | MeJA induced 9h | 30.723 |
| SRR8749029 | MeJA induced 9h | 21.178 |
| SRR8749030 | Uninduced | 152.966 |
| SRR8749031 | Uninduced | 229.172 |
| SRR8749032 | Uninduced | 147.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.508 |
| SRR8400027 | Control - Root | 28.867 |