Gene detail information of Glyur000960s00023956 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06690.1 | 6.00E-153 | NAD(P)-linked oxidoreductase superfamily protein |
| NR | XP_003551945.1 | 0 | PREDICTED: uncharacterized oxidoreductase At1g06690, chloroplastic-like [Glycine max] |
| COG | YP_007098133.1 | 5.00E-92 | putative oxidoreductase, aryl-alcohol dehydrogenase like protein [Chamaesiphon minutus PCC 6605] |
| Swissprot | tr|Q94A68|Y1669_ARATH | 0 | Uncharacterized oxidoreductase At1g06690, chloroplastic (Precursor) |
| trEMBL | tr|K7MRE8|K7MRE8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G14510.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00960 | 54359 | 58069 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000960s00023956.1 | PF00248.16 | Aldo_ket_red | 53 | 351 | 9.20E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.596 |
| SRR1783600 | control | 1.690 |
| SRR1783602 | moderate drought stress | 1.542 |
| SRR1811619 | moderate drought stress | 1.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.778 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.202 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.616 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.480 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.887 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.525 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 87.290 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 87.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.933 |
| SRR2868004 | Drought Stress (root) | 9.842 |
| SRR2967015 | Control (root) | 6.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.850 |
| SRR9715740 | Leaf | 107.388 |
| SRR9715741 | Leaf | 50.898 |
| SRR9715739 | Root | 1.598 |
| SRR9715742 | Root | 2.757 |
| SRR9715743 | Root | 3.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.315 |
| SRR8749028 | MeJA induced 9h | 1.841 |
| SRR8749029 | MeJA induced 9h | 0.241 |
| SRR8749030 | Uninduced | 0.616 |
| SRR8749031 | Uninduced | 0.001 |
| SRR8749032 | Uninduced | 0.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.858 |
| SRR8400027 | Control - Root | 11.252 |