Gene detail

Gene detail information of Glyur000960s00023950.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43020.1	0	polyamine oxidase 2
NR	XP_003551948.1	0	PREDICTED: probable polyamine oxidase 2-like isoform X1 [Glycine max]
COG	YP_007568558.1	2.00E-64	Amine oxidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprot	tr\|Q9SKX5\|PAO2_ARATH	0	Probable polyamine oxidase 2
trEMBL	tr\|I1N129\|I1N129_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G14620.1}

Sequence

Transcript Sequence

>Glyur000960s00023950.1
CATCCATCTTCCTTTCCCCTCATTAACATTACCTTTCACAATTTCGCTTCGCTCCTTTCTGGTTCTAGAATTTTCCTCTTCCCCTTTCCCCCTTTTTCTCGGAACTTTTTTCCGAGTTGCCAAACGCCGACACAAACAATCCTCCGAAACCTCCTCGTTCTCGTTCCTCNGCCCAGGATCGCGATCTCGCCGATTCGCGGCTTGTCGCTGAGGTTGAGCTTTTTTTTTTGGAAAATCAAGCTGCATGAACTGGTTCGGGAAGCTGGATTTATCGTCGAACTTGAATTTCAATCACTTCGTTACTTGTTTGTTGGTTTTTTCCCTCCATTTTTCTCCTCAATCGCTCTCCAATTTCCACGACGGTTGCCCCAAGCTGTTGTTAACNGATAATCACAGTAATCTCAATCGTAATCGAGAATTTTATTCGCAATATGGAGTCAAGAAATAAGAGTAATCCCAAATTAACCAGAGCTCTTTGCTATGGAAACGATAGCAGGCAGCAGGAAAGGTCACCCTCCGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCACGTGCACTTCATGATGCTTCAATTCAGGTTGTTCTCTTGGAGTCAAGGGAAAGACTTGGTGGTCGAATTCACACTGATTACTCGTTTGGCTTTCCTGTTGACCTAGGAGCATCATGGTTGCATGGAGTTTCCAAGGAGAATCCACTTGCTTCAGTGATTGGGAGGCTGGGGCTACCCCTTTACCGTACCAGTGGGGATAACTCCGTGCTCTATGACCATGATTTGGAAAGCTATGCACTTTTTGATATGGATGGGAATCAAGTTCCCCAGGAGTTGGTAACAAAAGTTGGTGAAGTATTTGAGACAATTTTACAGGAGACAGATAAAGTAAGAAAGGAATTCAGTGAAGATATGTCCATACAGCGTGGTCTTTCAATTGTTTTTGAAAGGAGGCCAGAATTCAGGTTGGAGGGGCTTGCCCATAAGGTGCTTCAGTGGTATTTATGCAGAATGGAGGGATGGTTTGCTGCAGATTCTGATACAATTTCACTGAAAGGATGGGACCAGGAAGTACTTCTCCCTGGCGGTCATGGTCTTATGGTCAGGGGCTACTTGCCTGTTATTAATACCCTAGCTAAGGGTCTTGATATTCGCCTGGGGCACAGGGTCACAAAAATTGTTAGGCGGTATAATGGAGTAAAAGTGACAGTGGAAAATGGGAAAACATTTGTTGCTGATGCTGCTGTTATTGCTGTCCCTCTTGGGGTCCTTAAAGCAAATACCATATTATTTGAGCCAAAACTCCCAGATTGGAAGGAAGCTGCCATTGCTGATCTTGGGGTTGGACTTGAGAATAAAATCATTTTGCACTTCGAGAATGTATTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACATCTTATGGATGTAGCTACTTCCTCAATCTCCACAAGGCTGCAAGTCATCCTGTCCTTGTTTACATGCCTTCTGGTCAACTGGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCTAACTTTGCTTTCTTGCAGCTCAAGAAGATTCTTCCCGATGCTTCTTCACCAATTCAGTATCTTGTGTCTCGGTGGGGCTCAGATATAAATTCACTAGGTTCATATAGCTATGATGCAGTAGGGAAACCCCACGACCTGTATGAGAGGCTACGGGTCCCGGTAGATAACTTGTTCTTTGCTGGAGAAGCAACAAGTATGAGCTATCCAGGTTCTGTCCATGGTGCATTCTCCACTGGAATGATGGCAGCTGAAGATTGCAGGATGCGTGTGCTGGAGCGATATGGAGAGTTAGATTTGTTCCAGACAGTGATGGGAGAGGAGGCTTCCTTGTCCATCCCCATTCAGATCTCTCGCCTGTAATCATAAATCATCAGCTTTGGGTCACACTTCCTAATTCTTCATTAGGATTTGGCTGTCCCGTTGTTCATCGACCTATAGCAGCTGTTTCAGTAATATAGTCTTTAAGTAAATGTCTTGTGTGGTAGTATTCTGTGTTGTATGTCCGTAGTTGATGTTGTGAAGAACTGGTAATTTGAATATTTAGTACCTGGAGAGGCTTTTGGCACCTCTAGAGTTTGAATAATCTCGTCTGAAAATGGCTGACGTGCACATCCTTGGTTTGAAGTTTAAGCTTATTATTAAGTAATTTATGTAGAAGCATGTTAATATATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00960	22304	27425	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17839	PAO4, PAO3, PAO2	EC:1.5.3.17 1.5.3.-	Arginine and proline metabolism	map00330
			beta-Alanine metabolism	map00410

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000960s00023950.1	PF01593.19	Amino_oxidase	37	456	8.20E-97

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.755
SRR1783600	control	12.800
SRR1783602	moderate drought stress	15.660
SRR1811619	moderate drought stress	15.786

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.316
DRR006520	Root Summer glycyrrhizin high producing strain	22.565
DRR006521	Root Winter glycyrrhizin high producing strain	4.704
DRR006522	Root Winter glycyrrhizin high producing strain	4.637
DRR006523	Root Summer glycyrrhizin low producing strain	14.359
DRR006524	Root Summer glycyrrhizin low producing strain	14.387
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.756
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.113

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.220
SRR2868004	Drought Stress (root)	45.544
SRR2967015	Control (root)	46.806

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	159.578
SRR9715740	Leaf	172.734
SRR9715741	Leaf	149.533
SRR9715739	Root	36.538
SRR9715742	Root	46.759
SRR9715743	Root	45.084

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.103
SRR8749028	MeJA induced 9h	55.229
SRR8749029	MeJA induced 9h	22.482
SRR8749030	Uninduced	50.266
SRR8749031	Uninduced	29.390
SRR8749032	Uninduced	22.558

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	72.863
SRR8400027	Control - Root	57.692