Gene detail

Gene detail information of Glyur000960s00023946.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23820.1	0	Pectin lyase-like superfamily protein
NR	KEH33635.1	0	polygalacturonase/glycoside hydrolase family protein [Medicago truncatula]
COG	YP_001179193.1	6.00E-62	galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|A7PZL3\|PGLR_VITVI	2.00E-138	Probable polygalacturonase
trEMBL	tr\|A0A072V631\|A0A072V631_MEDTR	0	Polygalacturonase/glycoside hydrolase family protein {ECO:0000313\|EMBL:KEH33635.1}

Sequence

Transcript Sequence

>Glyur000960s00023946.1
GTCAATTTTNCTGGACCGAACGTTCCACCCATTTCCAATCGAACCGGCCGGTTTAAAAACACTCTATCTCTATGGCTCCTCAGTATCATTTAACTACGATATTTCGCGTTTTCAGTGCAGTTTTCTTTCCGTTGTTTGGCTTCAGAGAAACAGATTCCTTTTTGTAGCACTCACTGCTTTCATTAAATGCTTTAACGGCCACTATTCTCTTCTCCCTTCCCTACCATCCATCATCTATCCCAAAAGATGCTTCTCTCACTCTCACGTTTCCTCTCCTTCCCCCTCTTCTTCATCTATTTCTTTTCATGTGTCGCCGCGGCTTACTCCGAAGCGGCGGCAACATGCTCCGGCATAGTGCCGCTTCGACACCGCGNCGACACGATTTCATTAACGGATTTCGGTGGTGTCGGTGACGGCAGGACGCTGAACACGAAGGCGTTCAGGGAGGCCATATACAGGATTCAGCACCTGAGGAGGCGAGGTGGGACGCTACTCTACGTGCCTCCGGGGGTGTACTTAACGGAGAGCTTCAACCTCACCAGCCACATGACCCTTTACCTCGCTGCTGGTGCTGTTATCAAAGCCACTCAGAGGTTGTGGAATTGGCCTTTAATTGCACCCTTACCATCTTATGGAAGAGGAAGGGAGCTCCCTGGAGGAAGATATATAAGTTTTATACATGGAGATGGACTTCGTGATGTAATAATCACAGGTGAGAATGGGACAATTGATGGGCAAGGAGATGTGTGGTGGAACATGTGGAGGCAGAGAACTCTTCAATTTACAAGACCAAACCTTGTTGAATTTGTCAATTCCAGAAATATTATTATTTCAAATGTGATTTTCAAGAATTCTCCCTTCTGGAATATACATCCAGTTTACTGCAGCAATGTTGTTGTTCGATTTGTCACTATTTTGGCTCCTCATGACTCCCCTAATACTGATGGAATTGATCCAGATTCAAGTTCAAATGTCTGCATAGAGGATTCATATATATCTACAGGAGATGATCTTGTGGCTGTGAAGAGTGGATGGGATGAATATGGGATTGCATATGGCCGCCCTAGCTATGGTATCACCATCCGGCGTCTAACAGGATCATCCCCATTTGCCGGAATTGCAGTAGGCAGTGAAACCTCTGGTGGAGTGGAGAATGTACTTGCTGAGCACATCAATCTCTTCAACATGGGAGTTGGTATCCACATTAAGACAAACAGTGGCAGGGGAGGGCTTATCAAGAACATAACAGTGTCTAATGTGTATATTGAGAATGCAAGGCAAGGAATAAAAATTGCAGGGGATGTGGGGGGCCATCCAGATGACAAGTTTAATCCTAATGCTCTCCCAGTTGTCAAGGGCATCACAATTAAGAATGTNTGGGGTGTGAAAGTTCTGCAGGCAGGTTTGATTAAAGGGTTGAGAGATTCCCCTTTCACTGAGATTTGTCTCTCTGATATCAACCTTCATGGTGTGACAGGACCTGGATCTCCCCCTTGGAAGTGTTCTGATGTGTTTGGATTTGCTCATCAGGTTAGCCCCTGGCCATGTTCTCAGCTGAGCAGCCAAGAGCCTGGATCTTGTGCCAANTATTCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00960	11305	15912	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000960s00023946.1	PF00295.12	Glyco_hydro_28	153	422	6.00E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.787
SRR1783600	control	5.808
SRR1783602	moderate drought stress	3.705
SRR1811619	moderate drought stress	3.883

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.393
DRR006520	Root Summer glycyrrhizin high producing strain	10.869
DRR006521	Root Winter glycyrrhizin high producing strain	3.666
DRR006522	Root Winter glycyrrhizin high producing strain	3.744
DRR006523	Root Summer glycyrrhizin low producing strain	4.003
DRR006524	Root Summer glycyrrhizin low producing strain	3.990
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.466
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.685

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.338
SRR2868004	Drought Stress (root)	5.269
SRR2967015	Control (root)	4.437

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.788
SRR9715740	Leaf	27.451
SRR9715741	Leaf	14.044
SRR9715739	Root	7.039
SRR9715742	Root	6.824
SRR9715743	Root	7.426

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.092
SRR8749028	MeJA induced 9h	1.722
SRR8749029	MeJA induced 9h	0.690
SRR8749030	Uninduced	0.784
SRR8749031	Uninduced	0.047
SRR8749032	Uninduced	0.523

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.216
SRR8400027	Control - Root	9.336