Gene detail information of Glyur000960s00023942 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16890.1 | 3.00E-23 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | AES65510.2 | 1.06E-168 | disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula] |
| Swissprot | tr|O23530|SNC1_ARATH | 7.00E-24 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
| trEMBL | tr|G7IQ97|G7IQ97_MEDTR | 4.00E-169 | Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313|EMBL:AES65510.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00960 | 3846 | 6748 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000960s00023942.1 | PF00931.17 | NB-ARC | 100 | 202 | 3.90E-12 |
| Glyur000960s00023942.1 | PF00560.28 | LRR_1 | 295 | 312 | 0.58 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.978 |
| SRR1783600 | control | 2.858 |
| SRR1783602 | moderate drought stress | 1.696 |
| SRR1811619 | moderate drought stress | 1.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.737 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.245 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.297 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.777 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.136 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.628 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.486 |
| SRR2868004 | Drought Stress (root) | 3.857 |
| SRR2967015 | Control (root) | 2.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 37.115 |
| SRR9715740 | Leaf | 10.098 |
| SRR9715741 | Leaf | 40.394 |
| SRR9715739 | Root | 2.346 |
| SRR9715742 | Root | 15.174 |
| SRR9715743 | Root | 12.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.087 |
| SRR8749028 | MeJA induced 9h | 9.253 |
| SRR8749029 | MeJA induced 9h | 11.608 |
| SRR8749030 | Uninduced | 11.104 |
| SRR8749031 | Uninduced | 5.157 |
| SRR8749032 | Uninduced | 6.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.161 |
| SRR8400027 | Control - Root | 9.628 |