Gene detail information of Glyur000960s00023941 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | KHM99686.1 | 1.35E-12 | DEAD-box ATP-dependent RNA helicase 53 [Glycine soja] |
| trEMBL | tr|I1KXV6|I1KXV6_SOYBN | 5.00E-13 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G41510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00960 | 716 | 1440 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.670 |
| SRR1783600 | control | 1.773 |
| SRR1783602 | moderate drought stress | 1.397 |
| SRR1811619 | moderate drought stress | 1.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.845 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.873 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.007 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.265 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.833 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.432 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.824 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.125 |
| SRR2868004 | Drought Stress (root) | 2.707 |
| SRR2967015 | Control (root) | 3.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.123 |
| SRR9715740 | Leaf | 0.744 |
| SRR9715741 | Leaf | 1.008 |
| SRR9715739 | Root | 5.632 |
| SRR9715742 | Root | 6.479 |
| SRR9715743 | Root | 6.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.235 |
| SRR8749028 | MeJA induced 9h | 3.435 |
| SRR8749029 | MeJA induced 9h | 4.031 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.638 |
| SRR8400027 | Control - Root | 4.052 |