Gene detail

Gene detail information of Glyur000959s00024506

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39350.1	0	ABC-2 type transporter family protein
NR	XP_003556547.1	0	PREDICTED: ABC transporter G family member 1-like [Glycine max]
COG	YP_001517187.1	1.00E-33	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|O80946\|AB1G_ARATH	0	ABC transporter G family member 1
trEMBL	tr\|I1NJ72\|I1NJ72_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G38610.1}

Sequence

Transcript Sequence

>Glyur000959s00024506.1
ATGTCAAATCGCATTGTGGCAGAGAATGTTCTCGATGACGAGACGACGACGAATTATGACACAATTGAACTGGGCGACGTCTCGAGCCGCCGTGCCGCCGGCGAGATGCCGACACTCGGTCAGCTCCTCAAGCACGTCGGAGACGTACAGAAGGAAGCCTCCGGCGACGGCAGCGAGACGCCGGTTCACCACGCGCTCCACATCGCCGGAATCGAGCCTCGGTCGCTTCCGTTCGTCCTCTCCTTCAGCAACCTCACCTACAGCGTTAAGGCCCGCCGGAAATTTAGCCTCACATCCATNTTCCCCTGTCGCCGCCGCCGCCGCGCGACGGCGGTGGAGGAGGCGCCGGCGGTTGGGGAGAGCGTGTCCACTCGGACGAAGACTCTGCTGAACGACATCTCCGGNGAGGCGCGCGACGGAGAGATCATGGCTGTTCTCGGCGCGAGCGGTTCTGGAAAATCCACACTGATCGACGCGCTGGCGAACCGAATCGCGAAGGGAAGCTTGAAAGGAAAGGTGGCGCTGAACGGCGAGACTCTGGAGTCTCGCCTCCTGAAGGTGATTTCAGCGTACGTGATGCAAGACGATCTCCTCTTCCCAATGCTCACAGTGGAAGAGACTCTCACCTTCGCCGCCGAATTCCGATTGCCNCGAACTCTCTCAAGTTCCAAGAAAAAGGCACGCGTCCAGGCACTAATCGACCAGCTCGGGCTCCGGAACGCCGCGACCACCGTCATCGGAGACGAAGGCCACCGCGGAGTCTCCGGCGGAGAGCGGCGGCGAGTCTCGATCGGAATCGACATAATCCACGACCCGATTCTGCTGTTCCTTGACGAACCAACCTCTGGACTTGACTCGACGAGTGCGTTCATGGTGGTGAAGGTGCTGCAGAGGATCGCACAGAGCGGTAGCATCGTGATCATGTCGATTCACCAGCCGAGTTACCGAATCCTAAGCCTTCTGGACCGCATGATCTTCCTCTCGCGAGGCCAAACGGTTTACAGCGGTTCACCGATGCAGTTACCGTCGTTCTTCGCAGAGTTCGGCCACCCGATACCGGAAACAGAGAACCGCACGGAGTTCGCGTTGGACCTGATTCGCGAACTCGAAGGCTCACCGGGAGGAACCAGGAGCCTAGTGGAGTTCAACAAGTCATGGCAGAGCATGGCAAAGAAGCATGAGAACGACGCCGTTTCGGAATTCGTTTCGGAACAAAACGGGATGTCGTTGAAGGAAGCAATTAGCGCGAGCATATCGAGAGGGAAGCTGGTGTCAGGTGCCGCTGCTGCCACTACTAACGGCACGTCTCAAACGACGTCGTCGTCTATGGTTCCCTCATTCGCGAACTCGTTTTGGAGGGAGACGGCGACGCTGTCGAAGCGTTCGATGAGGAATTCACGGAGGATGCCGGAGCTGTTTGGGATAAGGCTGGGCACGGTGATGGTGACGGGGATTATTCTCGCCACCGTGTTTTGGAATCTCGATAACTCTCCGAAAGGGGTGCAAGAGAGGCTTGGATTCTTCGCATTCGCAATGTCAACTACTTACTACACCACCGCCGATGCACTCCCAGTGTTTCTTCAGGAACGCTACATCTTCATGAGGGAAACCGCTTACAACGCTTATCGGAAATCCTCTTACCTCGTTTCCCACGCGCTTGTGGCGTTGCCAGCGCTTGTGTTCCTCTCGCTGGCCTTCGCTGCGACGACGTTTTGGGCCGTTGGGCTTGACGGTGGATTCTCGGGCTTCTTGTTTTACTTTCTCATAATCTTGGCTTCCTTTTGGGCCGGGAACTCGTTCGTCTCTTTCCTATCCGGTGTGGTACCTCACGTGATGTTGGGCTACACCATCGTCGTTGCGATTCTCGCTTANTTCTTGCTCTTCAGTGGGTTCTTCATCAACAGGGATAGGATCCCTGGGTACTGGATTTGGTTCCATTATTTGTCGCTGGTGAAGTACCCTTATGAAGGTGTTTTGCAGAACGAGTTTGAGGACTCATCGAAGTGCTTTGTGAAGGGGGTGCAGATGTTCGACAACACCCCTCTTGTTGATGCTCCCTATGAGCTCAAGCTGAAGCTGTTGGATAGCATAAGCGGCACCCTGGGAGTGAACATCACCGCCTCCACTTGTGTGACAACCGGTGCTGATGTATTGAGCCAGAATGGGGTCACGCAATTGAGCAAGTGGAACTGTTTGTGGATCACTGTTGCTTGGGGTTTCTTCTTCAGGTTTCTCTTCTACGTGTCTTTGCTTGTGGGAAGCAAGAACAAGAGGAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00959	47340	49619	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000959s00024506.1	PF00005.22	ABC_tran	130	282	5.00E-24
Glyur000959s00024506.1	PF01061.19	ABC2_membrane	456	663	2.90E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.157
SRR1783600	control	2.220
SRR1783602	moderate drought stress	2.367
SRR1811619	moderate drought stress	2.353

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.521
DRR006520	Root Summer glycyrrhizin high producing strain	0.476
DRR006521	Root Winter glycyrrhizin high producing strain	0.244
DRR006522	Root Winter glycyrrhizin high producing strain	0.239
DRR006523	Root Summer glycyrrhizin low producing strain	0.417
DRR006524	Root Summer glycyrrhizin low producing strain	0.291
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.669
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.895

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.717
SRR2868004	Drought Stress (root)	7.839
SRR2967015	Control (root)	10.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.725
SRR9715740	Leaf	3.306
SRR9715741	Leaf	1.679
SRR9715739	Root	12.016
SRR9715742	Root	3.958
SRR9715743	Root	6.763

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.883
SRR8749028	MeJA induced 9h	1.265
SRR8749029	MeJA induced 9h	0.273
SRR8749030	Uninduced	1.540
SRR8749031	Uninduced	1.744
SRR8749032	Uninduced	0.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.013
SRR8400027	Control - Root	14.043