Gene detail

Gene detail information of Glyur000959s00024504

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55120.1	2.00E-85	Chalcone-flavanone isomerase family protein
NR	XP_003592766.1	2.29E-134	Chalcone-flavonone isomerase [Medicago truncatula]
Swissprot	tr\|A4F1Q8\|CFI_CLITE	1.00E-130	Chalcone--flavonone isomerase
trEMBL	tr\|B7FJK3\|B7FJK3_MEDTR	9.00E-135	Chalcone-flavonone isomerase family protein {ECO:0000256\|RuleBase:RU361158}

Sequence

Transcript Sequence

>Glyur000959s00024504.1
CCTAAAATTAAAAAAACAATCATCACAGNGAGCAGTAATGGAACGGCCGTCCGTGACAGCTGTAGAGGTGGAGAACATCGCATTCCCTCCCAGCGTGAAGCCTCCGGGCTCCGCCGACACCTTCTTCCTCGGCGGCGCTGGTGAGAGGGGCCTCCAAATCCAAGACAAATTCGTCAAGTTCACCGCCATCGGGGTTTATTTGCAGGACAACGCCGTTCCCTTCCTCTCCGCTAAATGGAAGGGTAAGCCCGCTCATGAGTTAACGGAATCCGTCCCGTTCTTCCGCGATATCGTTACAGGTCCATTTGAGAAATTTATGCGGGTGACAATGATCTTGCCATTGACGGGCCAGCAATACTCAGAGAAAGTGTCTGAAAATTGTGTAGCCATTTGGAAGTCTCTTGGGATTTATACTGATGAAGAAGCCAAAGCAATAGAAAAGTTTGTTTCGGTTTTCAAAGATGAAACATTCCCACCAGGCTCGTCTATCCTTTTCACAGTATCACCCAAAGGATCATTAACGGTAAGTTTCTCTAAAGATGGATCCATTCCAGAGGTTGGGTCAGCAGTTATAGAGAATAAACTACTTTCAGAGGCTGTGCTGGAGTCAATGATAGGTAAGGATGGCGTCTCCCCTGCAGCAAAACAGAGTTTGGCCTCCAGATTATCTGGGTTATTCAAAGAGGGTGGTGATACAGCAAGTAACTGATTATATCACCAATCGAAGATGAAAGTTCTGTTCTGCCACTAAAGACCAAGCAGAAATTTTATCTGGGAGCACTTTCATAGTTTCATATTACCACTTGGGCACTCGGCGACTTTGTAGTGTATTAATTAATATAATAATAAATGGAGAAAATGCAGATTTTACGGCTTCTTTTAAGTACTAGACTGTGATGTGCGATTTAAAATATAAAATAAAATAATAGACAGATGGCTCGGGACGGGGACTTGTTTNGTGTTTACATTTTGTCAATGAAAATCTTGTTTCTCTGTCATTTGTCATTTTACTTTCTAAAAAACAAAATTAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00959	21898	25387	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01859	E5.5.1.6	EC:5.5.1.6	Flavonoid biosynthesis	map00941

Gene Ontology

biological_process
GO:0009813 flavonoid biosynthetic process

molecular_function

GO:0016872 intramolecular lyase activity

GO:0045430 chalcone isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000959s00024504.1	PF02431.10	Chalcone	16	213	2.40E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	60.653
SRR1783600	control	60.689
SRR1783602	moderate drought stress	61.028
SRR1811619	moderate drought stress	60.935

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.035
DRR006520	Root Summer glycyrrhizin high producing strain	28.452
DRR006521	Root Winter glycyrrhizin high producing strain	26.070
DRR006522	Root Winter glycyrrhizin high producing strain	25.527
DRR006523	Root Summer glycyrrhizin low producing strain	12.025
DRR006524	Root Summer glycyrrhizin low producing strain	12.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	99.932
DRR006526	Leaf Summer glycyrrhizin high producing strain	99.127

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	100.657
SRR2868004	Drought Stress (root)	149.773
SRR2967015	Control (root)	76.553

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	129.217
SRR9715740	Leaf	48.275
SRR9715741	Leaf	58.771
SRR9715739	Root	13.689
SRR9715742	Root	36.335
SRR9715743	Root	32.950

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	274.856
SRR8749028	MeJA induced 9h	209.902
SRR8749029	MeJA induced 9h	205.895
SRR8749030	Uninduced	293.341
SRR8749031	Uninduced	139.264
SRR8749032	Uninduced	142.975

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	84.199
SRR8400027	Control - Root	44.311