Gene detail information of Glyur000959s00024501 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55120.1 | 2.00E-35 | Chalcone-flavanone isomerase family protein |
| NR | NP_001236755.1 | 1.27E-94 | chalcone--flavonone isomerase 1B-1 [Glycine max] |
| Swissprot | tr|Q53B75|CF1B1_SOYBN | 6.00E-97 | Chalcone--flavonone isomerase 1B-1 |
| trEMBL | tr|C6TDI3|C6TDI3_SOYBN | 5.00E-95 | Chalcone-flavonone isomerase family protein {ECO:0000256|RuleBase:RU361158} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00959 | 10787 | 14752 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01859 | E5.5.1.6 | EC:5.5.1.6 | Flavonoid biosynthesis | map00941 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000959s00024501.1 | PF02431.10 | Chalcone | 17 | 87 | 9.20E-14 |
| Glyur000959s00024501.1 | PF02431.10 | Chalcone | 95 | 181 | 1.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.413 |
| SRR1783600 | control | 6.133 |
| SRR1783602 | moderate drought stress | 5.327 |
| SRR1811619 | moderate drought stress | 4.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.341 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.380 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.409 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.173 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.627 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.438 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.874 |
| SRR2868004 | Drought Stress (root) | 14.496 |
| SRR2967015 | Control (root) | 16.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.269 |
| SRR9715740 | Leaf | 0.192 |
| SRR9715741 | Leaf | 0.606 |
| SRR9715739 | Root | 5.837 |
| SRR9715742 | Root | 2.205 |
| SRR9715743 | Root | 2.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.208 |
| SRR8749028 | MeJA induced 9h | 0.353 |
| SRR8749029 | MeJA induced 9h | 0.306 |
| SRR8749030 | Uninduced | 0.034 |
| SRR8749031 | Uninduced | 0.247 |
| SRR8749032 | Uninduced | 0.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.385 |
| SRR8400027 | Control - Root | 29.195 |