Gene detail

Gene detail information of Glyur000958s00027849

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18300.1	1.00E-56	nudix hydrolase homolog 4
NR	AFK38562.1	6.13E-126	unknown [Lotus japonicus]
COG	YP_673895.1	3.00E-13	NUDIX hydrolase [Chelativorans sp. BNC1]
Swissprot	tr\|Q9LE73\|NUDT4_ARATH	3.00E-71	Nudix hydrolase 4
trEMBL	tr\|I3SE70\|I3SE70_LOTJA	2.00E-126	Uncharacterized protein {ECO:0000313\|EMBL:AFK38562.1}

Sequence

Transcript Sequence

>Glyur000958s00027849.1
GTTTGAACATTAAAGTGACCTCCACGCGCAGACACACANTGTAATGTTCACCACCAGACAGGCAGATATATATCCCAATGTCTGTCTTGGGTTGTTCCAAAACCAAACCAAGCCAAACCAAAATCTTCTCTCATAATTCATTCCCATCCATTGATGTCTATTGCTTCCTCTTCCTCTGATCTTCTCTTCTTTCTCTCTTTCCTTTCTCTAATCTACAACAACAAGAACAACAACAACAAGGGCTTGAATATGGGTCTCTTACTTTCAAGGAATTTGGCCTTCAAATTCTTCTACCCTTTTCTCTTCTCCAAAAAAGTTCAAAGTGATTTGTTGTTTCCTAAGCAATTGGAGAACGTCATAAGCTTGGTGTCTCCTCGTACTGGAAGGCATTTGCAGCGCTATGACAAAGGGTGTCGCCAAGTTGTGGGATGCATTCCCTACAGATACAAGAGCAATGGAACCCAGGAAAATGAAATTGAGGTTCTTGTGATTAGTGCTCAGAAGGGTCATGGAATGCAGTTCCCAAAGGGAGGTTGGGAATCTGATGAGTCTATGGAGCAGGCTGCTTTGAGGGAAACCATAGAGGAAGCTGGGGTTTTTGGCAGTGTTGAAAATAAATTGGGGAAATGGTATTATAAGAGCAAACGCCAACCCANCATCCATGAGGGATACATGTTCCCTTTGCTTGTTACTAAGGAGTTGGATAATTGGCCAGAGATGAACACAAGAAAAAGAAGATGGATGACTGTGGCTGAAGCAAAAGAAATATGCCCATATGCTTGGATGAANGAGGCTTTGGATATATTGGTTAATAGACAACAAAGTCAACTGCAGCCAAAAATGATGGGAGATATAAGTAGGTTGTAAAATGTTAGGTACTCTCATGCTTTTGGAATCTACAAAGTGGTAGAACAGAAGCACTTCACTCACAAGATGTCAGGACAGAGAAAATGAAATCAAAATCATTAACCTGGGAGAAACTGCTACACACCTCATGTGGTTTTTGTCAATTTGTCCCTTGCAATNTGTTCCTGTCTTCAAATTTGCTAGAATTGGCAAGTACAGTAGCAGATTACGATTCGTGCAAGTTTGGTTTTCTATTAGAAGATTGCAGANNTACGTTTGAACTCAAAGTAGCTATAGCGTTTCTTTTGAGCAAACGCACTTTTAGATTCAAACTTACATTTGTCACTGAAAACCAAACATGCTTGTAGAGTGTAGTTGAGAGATCTAGCTATAGAAGTCCCTTGTGTAGATGTAACAATTCAATTCAATTCATTCTTTCATTCATTTCATTCTTTGGTAATGTATCTAACAAGCTATGTGTAGTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00958	84395	86668	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000958s00027849.1	PF00293.23	NUDIX	89	206	1.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.522
SRR1783600	control	14.571
SRR1783602	moderate drought stress	22.373
SRR1811619	moderate drought stress	22.055

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	218.928
DRR006520	Root Summer glycyrrhizin high producing strain	215.188
DRR006521	Root Winter glycyrrhizin high producing strain	55.705
DRR006522	Root Winter glycyrrhizin high producing strain	54.145
DRR006523	Root Summer glycyrrhizin low producing strain	125.973
DRR006524	Root Summer glycyrrhizin low producing strain	124.174
DRR006525	Leaf Summer glycyrrhizin high producing strain	70.487
DRR006526	Leaf Summer glycyrrhizin high producing strain	70.305

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.662
SRR2868004	Drought Stress (root)	151.944
SRR2967015	Control (root)	406.761

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	498.879
SRR9715740	Leaf	497.644
SRR9715741	Leaf	584.583
SRR9715739	Root	82.881
SRR9715742	Root	278.049
SRR9715743	Root	244.616

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	187.436
SRR8749028	MeJA induced 9h	339.910
SRR8749029	MeJA induced 9h	275.732
SRR8749030	Uninduced	337.260
SRR8749031	Uninduced	397.418
SRR8749032	Uninduced	284.368

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.930
SRR8400027	Control - Root	102.058