Gene detail

Gene detail information of Glyur000958s00027848

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35980.1	6.00E-20	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
NR	AES76078.2	4.85E-92	zinc-finger of monoamine-oxidase A repressor R1 [Medicago truncatula]
Swissprot	tr\|Q9SJ52\|YLS9_ARATH	3.00E-31	Protein YLS9
trEMBL	tr\|G7KQ98\|G7KQ98_MEDTR	2.00E-92	Zinc-finger of monoamine-oxidase A repressor R1 {ECO:0000313\|EMBL:AES76078.2}

Sequence

Transcript Sequence

>Glyur000958s00027848.1
CAAATGTACGAACTACGAAGTGAAGTTAACATAAGGCTGTGTTGTTTTGTTCTGTGGGGGTTGAAATCGAAATCTGAGAAAGAGGAATGGGGAGAGCGAAAGGGAGACCGAGAGAAGAGAGAGCAAAATGCGACGACTACGAAGCTCTCAGAAATGCTCGCATGTTACAGAACAAGGCTCGGTTGGAATCTCTGGGTATTCTCAATAAAGTTTCTCAGCTTCGAGAAGCTTCTACTCAATCCAAGAAGAAGAAGCCTCGCCCTAATATCAGAAGGGTCTACGGTCTCACTCCCCTGCGCCGCTCCCACCGAATCAAATCCTCCGCCACCGCCGCCACCGACACCGACACTTCCGCCGCAAAGTCCAACCACCTTCCCCCGCGACGCTCTCAGCGTTTGAGAGAGAGTTCCACTTCCACCAACCACCCTGTGACCCCAAAACAAGAGAAGGTTGCTACAGATAAAGGGGAAGAAGAAGAGAAGAAGAGGCCTGCCAATGCACCTCTCATTGAACTGAACAAAGCAGAGCTTCTTCTTTCTGCAGAATGTTCTGCTCGGCGCTGCAATAGCAAGGGCAGAGGCAGAAAGACTGATTGTTCTGTCTGTCACTCTAGCACTGGTGTATTTTGCAGAGCCTGTCTCAAGGTTCGGTATGGTGAAGAAATGGAAGAGGTGAGGGAGANCAAGGGATGGATGTGTCCACATTGCATAGAAGAGAAAGGAATAAACCCTTACTGGATATGTAACAGCTCAATATGCCTGAGGAAACGAAAGATGTCTCCAACTGGGCTAGCAATATACCAAGTAATCTCCCCCTCAAGTGTCAAGTTCCACATAACTGATGCCACCCTCACACAATTCAACCTCACAACCAACAACAACACCTTACACTACAACCTCAAAGTCAACATCACAGTTAGAAACCCCAACAACAACATCATAGTATACTATAGGAGGATAACAGCAATTGCTTGGTACAAAGATCATGACTTTTCTTGGGTGAGTTTGACACCCTTTGACCAAGGACACAAGAACACCACTTTCCTTGGGCCTATTGTGTTCAAGGGGCAGAGTGTGATGAAGCTAAAAGGGAAACAACTTGATGAGTATGCTGAAGAGACACATGTTGGGGTTTACAATGACTTGGCTGTGGATTTGGATCTTAGAATTAGAGCCAAGTATGGGAGGTTCAGGAGTGGTCGTTTCAATCCACCAATTGTGCAGTGTCGTCGTTTGAGTGTTCCTTTGATGATTTCCNATGGTACTACAACAACATCATCAACACCTACTTTCAGTGTCAGAAAATGTAGCACTGGTTCTTTCTTTACAGATCGTGATGCAGCTCAAGCTGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00958	70787	76939	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000958s00027848.1	PF10497.4	zf-4CXXC_R1	154	239	2.00E-20
Glyur000958s00027848.1	PF03168.8	LEA_2	274	373	3.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.775
SRR1783600	control	1.824
SRR1783602	moderate drought stress	1.367
SRR1811619	moderate drought stress	1.354

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.699
DRR006520	Root Summer glycyrrhizin high producing strain	2.252
DRR006521	Root Winter glycyrrhizin high producing strain	0.929
DRR006522	Root Winter glycyrrhizin high producing strain	1.134
DRR006523	Root Summer glycyrrhizin low producing strain	0.594
DRR006524	Root Summer glycyrrhizin low producing strain	0.649
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.700
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.873

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.623
SRR2868004	Drought Stress (root)	14.681
SRR2967015	Control (root)	17.188

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.946
SRR9715740	Leaf	11.269
SRR9715741	Leaf	12.099
SRR9715739	Root	0.930
SRR9715742	Root	2.166
SRR9715743	Root	2.116

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.726
SRR8749028	MeJA induced 9h	4.576
SRR8749029	MeJA induced 9h	4.013
SRR8749030	Uninduced	4.639
SRR8749031	Uninduced	2.070
SRR8749032	Uninduced	1.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.378
SRR8400027	Control - Root	9.206