Gene detail

Gene detail information of Glyur000958s00027845.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17840.1	3.00E-125	receptor-like kinase 902
NR	KEH26683.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_004579826.1	2.00E-19	hypothetical protein [Lacinutrix sp. 5H-3-7-4]
Swissprot	tr\|Q9LP77\|Y1848_ARATH	0	Probable inactive receptor kinase At1g48480 (Precursor)
trEMBL	tr\|A0A072UCA8\|A0A072UCA8_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH26683.1}

Sequence

Transcript Sequence

>Glyur000958s00027845.1
TCCAAACTCACATAACTGCTGCTTCTCTCTCTCTTTTTATTATCTTCACACAACACACACACACACACACACAAAAACCAAAGAGAAAGAAGAAGAGAGTGAGAGTTGTGAGAGAGCACATAAGAAAGAAAGAAAAAAAACAGAGAGAAAGTAACACATTGCAATTGCTGCATATTATTACCATTTTCATTTCACCAAACAATACCAATTCCAATAATGCACCTTCACTTCTTCTTCCTTCTTCTTCTTCTCCCACTTGCTAAACCGGATCTGACTTCCGAACGCGCCGCCCTGTTATCCGTACGCGCCGCCGTGGGAGGCAGAACCCTCCTCTGGAACGCCACCTCCACCACCCCCTGCAACTGGGCCGGCGTCAAATGCGACCAAAACCTCACCGGCGTCGTCGAGCTCCGCCTCCCCGGCGTCGCACTCTCCGGCGACTTCCCCGCCGGAGTCTTCCCGGAGCTCCCAAAACTCCGAACACTCAGCCTCCGCTTCAACGCCCTCTCCGGCCCCATCCCCGCCGACATCTCCGCCTGCTCCTCCCTCCGCAACCTCTACCTCCAGCAGAACCTCCTCTCCGGCGAGATTCCNGCGACACTTTTCCGACTAACCTCCCTCGTCCGCCTCGACCTATCCTCCAACAACTTCTCCGGTCACATTCCGGCCGGGTTTAGTAACCTCACCCGCCTCAAAACCCTCTTGCTCCAGAACAACCAGTTCACCGGTTCTCTCCCCGAGTTGACCCGGGGCAAACTCGCTCAGTTCAACGTGTCCCACAACATGCTAAACGGTTCAGTCCCTCAAAAGTTGCAAACTTTCGATAAAGACTCGTTTTTGGGTAACTTCCTGTGTGGGAAGCCCCTTGAACCTTGTCCTGGGGATGCACCAAAAAATGGGTCTAATGGGAATTCAACAACTTCTTCAAGTGGGGTTGGAGAAAATCAAGGGTTGGATGAGAAGAAGAAGAAGAAGAGCAAGTTATCTGGTGGTGCCATTGCTGGGATTGTTATTGGGTCAGTGGTGGTTCTTTTGTTTGTGGTTTTTGCTTTGATACTTCTGTGCAGGAACAAAAATGGTGAAAAAAGGACTAAATCTGTTGATGACGTGGCAGCAAATGTGAAGAATCAGCATCATCGTGATGCTGAGGTGGCAATTCGGGGTGAGAATGGAAATGGGGTGGTGGTGAATGGTGGCGGGAGAGGTGAAGGGGTGGTTGTTGGTGGTGGTGACAAAAAGTTGGTGTTTTTTAGGAATTGGGGGAAGGTGTTTGATTTGGAGGATTTGCTTAGAGCCTCTGCTGAGGTTTTGGGGAAAGGGACTTTTGGGACTTCTTATAAGGCGGTTTTGGAGGCTGGGCCTGTTGTTGTGGCTGTGAAGAGGTTGAGGGATGTGACCATTTCTGAGAGGGAATTCAAGGAGAGGATTGAAGGGGTTGGTGCAATGGATCATGAGAATTTGGCACCTCTTAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTACTTGCCAATGGGAAGCTTATCTGCACTCTTGCATGGAAACAAAGGAGCGGGTAGGACACCACTTAATTGGGAAATCAGATCAGGCATTGCGCTTGGAGCTGCCCGCGGCATTGAGTACCTACATTCACAAGGGCCTAATGTCTCTCATGGTAATATAAAGTCATCCAACATCCTCCTAACCAAGTCCTATGATGCAAGAGTATCCGATTTCGGCCTTGCACAACTTGTTGGCCCTTCATCCACACCCAACCGGGTTGCCGGCTACCGCGCTCCTGAGGTAACCGATCCTCGCAAGGTATCCCCGAAGGCAGATGTATACAGCTTCGGCGTGTTGCTCTTGGAACTTCTTACTGGGAAGGCTCCAACTCATGCCCTCTTGAATGAGGAAGGAGTGGACCTTCCCAGATGGGTGCAATCGGTCGTCAAGGAAGAGTGGACTTCTGAGGTCTTTGATCTCGAGCTCCTTAGGGATCAGAATGTTGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCCCCGTACCCGGATAACCGCCCTTCAATGTCCGAAGTGAGACAGCACATAGAAGAGTTATGTAGATCTAGCTTGAAAGAGATTCAACACCAAATCCAACAACAGCCTGATTTGATCAATGATATAGATGATATATCTTCTCGATGAGTTTAGACTGTAAAAGGGATCTTTCTTGGCTTTGTCAAAATCTCCATAGTTTGCTTCCTGAATCATGTGCTTATGTTGTTGTAACTTTTTTTTTTAGCTTGGGAATCAATTTTCTTCAGCACCCTTTGTCTAGTTCCCCCCTTTGTCTACTTTGAATTTTCCTCCNATCTCCCTCCATTGTACTAGTTCCCCCCTTTGTCTTCCCAATCAATCAATATCTTTGGGGGAGTGCATATCAGTTCCATTAGTTATTTGGTGGTGGATACTGGTTGATGTAATTATTACTCTTGCTTTTAACATTAGCTTTTGGTGAAACCTTTTTCTGTGTTGAAATNGAGAGGATATAAGTCTTTGTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00958	52645	55963	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000958s00027845.1	PF08263.7	LRRNT_2	21	56	1.00E-07
Glyur000958s00027845.1	PF13855.1	LRR_8	109	168	7.90E-09
Glyur000958s00027845.1	PF00069.20	Pkinase	363	625	3.20E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.062
SRR1783600	control	23.316
SRR1783602	moderate drought stress	14.753
SRR1811619	moderate drought stress	14.615

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.001
DRR006520	Root Summer glycyrrhizin high producing strain	15.909
DRR006521	Root Winter glycyrrhizin high producing strain	0.087
DRR006522	Root Winter glycyrrhizin high producing strain	0.085
DRR006523	Root Summer glycyrrhizin low producing strain	4.971
DRR006524	Root Summer glycyrrhizin low producing strain	4.982
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.660
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.678

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.650
SRR2868004	Drought Stress (root)	33.928
SRR2967015	Control (root)	34.378

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.763
SRR9715740	Leaf	4.810
SRR9715741	Leaf	3.394
SRR9715739	Root	16.257
SRR9715742	Root	8.797
SRR9715743	Root	8.962

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.032
SRR8749028	MeJA induced 9h	1.549
SRR8749029	MeJA induced 9h	1.087
SRR8749030	Uninduced	0.636
SRR8749031	Uninduced	0.060
SRR8749032	Uninduced	0.134

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.166
SRR8400027	Control - Root	48.070