Gene detail information of Glyur000957s00027260 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 4.00E-27 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | XP_003622506.1 | 1.63E-49 | TMV resistance protein N [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 3.00E-31 | TMV resistance protein N |
| trEMBL | tr|A0A072TZ76|A0A072TZ76_MEDTR | 6.00E-50 | Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313|EMBL:KEH18830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00957 | 8891 | 13544 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000957s00027260.1 | PF01582.15 | TIR | 24 | 121 | 1.90E-27 |
| Glyur000957s00027260.1 | PF07725.7 | LRR_3 | 244 | 262 | 2.00E-06 |
| Glyur000957s00027260.1 | PF00560.28 | LRR_1 | 306 | 325 | 0.58 |
| Glyur000957s00027260.1 | PF00560.28 | LRR_1 | 348 | 369 | 0.71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.048 |
| SRR1783600 | control | 4.132 |
| SRR1783602 | moderate drought stress | 3.220 |
| SRR1811619 | moderate drought stress | 3.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.835 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.227 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.753 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.094 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.516 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.209 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.948 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.234 |
| SRR2868004 | Drought Stress (root) | 13.071 |
| SRR2967015 | Control (root) | 12.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.721 |
| SRR9715740 | Leaf | 1.945 |
| SRR9715741 | Leaf | 5.536 |
| SRR9715739 | Root | 0.426 |
| SRR9715742 | Root | 8.009 |
| SRR9715743 | Root | 6.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.509 |
| SRR8749028 | MeJA induced 9h | 8.191 |
| SRR8749029 | MeJA induced 9h | 3.188 |
| SRR8749030 | Uninduced | 3.328 |
| SRR8749031 | Uninduced | 1.402 |
| SRR8749032 | Uninduced | 1.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.913 |
| SRR8400027 | Control - Root | 14.680 |