Gene detail information of Glyur000956s00035217 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22490.2 | 3.00E-50 | Cyclin D2;1 |
| NR | XP_006596367.1 | 6.47E-170 | PREDICTED: cyclin-D4-1-like isoform X2 [Glycine max] |
| Swissprot | tr|Q69QB8|CCD31_ORYSJ | 2.00E-69 | Cyclin-D3-1 |
| trEMBL | tr|I1MAZ0|I1MAZ0_SOYBN | 3.00E-170 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G35850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00956 | 44891 | 48753 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000956s00035217.1 | PF00134.18 | Cyclin_N | 64 | 131 | 2.30E-09 |
| Glyur000956s00035217.1 | PF02984.14 | Cyclin_C | 164 | 257 | 3.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.474 |
| SRR1783600 | control | 0.560 |
| SRR1783602 | moderate drought stress | 1.041 |
| SRR1811619 | moderate drought stress | 1.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.725 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.730 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.682 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.746 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.738 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.759 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.495 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.514 |
| SRR2868004 | Drought Stress (root) | 3.316 |
| SRR2967015 | Control (root) | 4.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.366 |
| SRR9715740 | Leaf | 0.866 |
| SRR9715741 | Leaf | 1.103 |
| SRR9715739 | Root | 0.143 |
| SRR9715742 | Root | 0.652 |
| SRR9715743 | Root | 0.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.327 |
| SRR8749028 | MeJA induced 9h | 0.600 |
| SRR8749029 | MeJA induced 9h | 0.471 |
| SRR8749030 | Uninduced | 0.821 |
| SRR8749031 | Uninduced | 0.230 |
| SRR8749032 | Uninduced | 0.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.066 |
| SRR8400027 | Control - Root | 3.520 |