Gene detail information of Glyur000954s00026543 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63270.1 | 5.00E-16 | RPM1-interacting protein 4 (RIN4) family protein |
| NR | AFK42377.1 | 4.58E-33 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8GYN5|RIN4_ARATH | 1.00E-08 | RPM1-interacting protein 4 |
| trEMBL | tr|I3SQ35|I3SQ35_LOTJA | 2.00E-33 | Uncharacterized protein {ECO:0000313|EMBL:AFK42377.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00954 | 82058 | 83058 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000954s00026543.1 | PF05627.6 | AvrRpt-cleavage | 7 | 41 | 5.90E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.117 |
| SRR1783600 | control | 0.119 |
| SRR1783602 | moderate drought stress | 0.413 |
| SRR1811619 | moderate drought stress | 0.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.021 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.741 |
| SRR2868004 | Drought Stress (root) | 11.794 |
| SRR2967015 | Control (root) | 5.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.717 |
| SRR9715740 | Leaf | 1.957 |
| SRR9715741 | Leaf | 4.760 |
| SRR9715739 | Root | 2.958 |
| SRR9715742 | Root | 2.886 |
| SRR9715743 | Root | 3.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.580 |
| SRR8749028 | MeJA induced 9h | 6.441 |
| SRR8749029 | MeJA induced 9h | 5.446 |
| SRR8749030 | Uninduced | 59.620 |
| SRR8749031 | Uninduced | 120.097 |
| SRR8749032 | Uninduced | 83.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.109 |
| SRR8400027 | Control - Root | 0.663 |