Gene detail information of Glyur000954s00026539.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67730.1 | 1.00E-10 | beta-ketoacyl reductase 1 |
| NR | AFK47548.1 | 4.83E-39 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8L9C4|KCR1_ARATH | 2.00E-12 | Very-long-chain 3-oxoacyl-CoA reductase 1 |
| trEMBL | tr|I3T4V6|I3T4V6_LOTJA | 2.00E-39 | Uncharacterized protein {ECO:0000313|EMBL:AFK47548.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00954 | 63917 | 64186 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10251 | HSD17B12, KAR, IFA38 | EC:1.1.1.62 1.1.1.330 | Fatty acid metabolism | map01212 |
| Fatty acid elongation | map00062 | |||
| Steroid hormone biosynthesis | map00140 | |||
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.223 |
| SRR1783600 | control | 7.453 |
| SRR1783602 | moderate drought stress | 10.359 |
| SRR1811619 | moderate drought stress | 10.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.594 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.168 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.912 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.796 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.409 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.410 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.560 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.792 |
| SRR2868004 | Drought Stress (root) | 10.256 |
| SRR2967015 | Control (root) | 10.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.421 |
| SRR9715740 | Leaf | 3.010 |
| SRR9715741 | Leaf | 4.995 |
| SRR9715739 | Root | 23.150 |
| SRR9715742 | Root | 27.406 |
| SRR9715743 | Root | 30.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.130 |
| SRR8749028 | MeJA induced 9h | 3.150 |
| SRR8749029 | MeJA induced 9h | 3.588 |
| SRR8749030 | Uninduced | 22.760 |
| SRR8749031 | Uninduced | 21.431 |
| SRR8749032 | Uninduced | 42.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.748 |
| SRR8400027 | Control - Root | 34.741 |