Gene detail information of Glyur000954s00026531.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03520.1 | 1.00E-170 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | XP_007132639.1 | 0 | hypothetical protein PHAVU_011G112200g [Phaseolus vulgaris] |
| COG | YP_007090122.1 | 1.00E-05 | Core-2/I-Branching enzyme [Chroococcidiopsis thermalis PCC 7203] |
| trEMBL | tr|V7AIF6|V7AIF6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW04633.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00954 | 18047 | 23124 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT14 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000954s00026531.1 | PF02485.16 | Branch | 90 | 352 | 1.40E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.805 |
| SRR1783600 | control | 11.922 |
| SRR1783602 | moderate drought stress | 10.373 |
| SRR1811619 | moderate drought stress | 10.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.664 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.977 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.556 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.110 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.562 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.713 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.056 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.558 |
| SRR2868004 | Drought Stress (root) | 18.807 |
| SRR2967015 | Control (root) | 18.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.136 |
| SRR9715740 | Leaf | 16.721 |
| SRR9715741 | Leaf | 13.830 |
| SRR9715739 | Root | 10.513 |
| SRR9715742 | Root | 14.627 |
| SRR9715743 | Root | 13.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.977 |
| SRR8749028 | MeJA induced 9h | 33.880 |
| SRR8749029 | MeJA induced 9h | 21.119 |
| SRR8749030 | Uninduced | 28.205 |
| SRR8749031 | Uninduced | 20.092 |
| SRR8749032 | Uninduced | 13.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.545 |
| SRR8400027 | Control - Root | 25.042 |