Gene detail information of Glyur000954s00026529 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03530.1 | 2.00E-67 | nuclear assembly factor 1 |
| NR | XP_006592413.1 | 0 | PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Glycine max] |
| trEMBL | tr|K7LU49|K7LU49_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G11810.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00954 | 3990 | 7270 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000954s00026529.1 | PF04410.9 | Gar1 | 152 | 301 | 5.60E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.347 |
| SRR1783600 | control | 12.404 |
| SRR1783602 | moderate drought stress | 16.483 |
| SRR1811619 | moderate drought stress | 16.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.408 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.159 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.050 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.628 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.798 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.586 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.397 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.750 |
| SRR2868004 | Drought Stress (root) | 8.804 |
| SRR2967015 | Control (root) | 9.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.573 |
| SRR9715740 | Leaf | 11.581 |
| SRR9715741 | Leaf | 6.713 |
| SRR9715739 | Root | 4.143 |
| SRR9715742 | Root | 16.958 |
| SRR9715743 | Root | 12.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.677 |
| SRR8749028 | MeJA induced 9h | 22.827 |
| SRR8749029 | MeJA induced 9h | 23.449 |
| SRR8749030 | Uninduced | 2.698 |
| SRR8749031 | Uninduced | 2.444 |
| SRR8749032 | Uninduced | 2.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.527 |
| SRR8400027 | Control - Root | 9.967 |