Gene detail information of Glyur000954s00026528 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61250.1 | 7.00E-26 | secretory carrier 3 |
| NR | XP_003527448.1 | 3.33E-38 | PREDICTED: secretory carrier-associated membrane protein 1-like isoform 1 [Glycine max] |
| Swissprot | tr|Q7F613|SCAM2_ORYSJ | 4.00E-35 | Secretory carrier-associated membrane protein 2 |
| trEMBL | tr|I1KF52|I1KF52_SOYBN | 1.00E-38 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G45160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00954 | 73 | 2087 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000954s00026528.1 | PF04144.8 | SCAMP | 27 | 73 | 6.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.117 |
| SRR1783600 | control | 40.219 |
| SRR1783602 | moderate drought stress | 33.390 |
| SRR1811619 | moderate drought stress | 33.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.637 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.006 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 70.746 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 72.043 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.372 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.129 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.116 |
| SRR2868004 | Drought Stress (root) | 42.135 |
| SRR2967015 | Control (root) | 37.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.664 |
| SRR9715740 | Leaf | 26.750 |
| SRR9715741 | Leaf | 23.924 |
| SRR9715739 | Root | 27.872 |
| SRR9715742 | Root | 28.374 |
| SRR9715743 | Root | 27.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 56.748 |
| SRR8749028 | MeJA induced 9h | 24.093 |
| SRR8749029 | MeJA induced 9h | 43.303 |
| SRR8749030 | Uninduced | 20.253 |
| SRR8749031 | Uninduced | 10.004 |
| SRR8749032 | Uninduced | 26.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.688 |
| SRR8400027 | Control - Root | 34.996 |