Gene detail

Gene detail information of Glyur000953s00031165.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26100.1	0	casein kinase 1
NR	XP_007154635.1	0	hypothetical protein PHAVU_003G135100g [Phaseolus vulgaris]
COG	YP_632759.1	4.00E-19	serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622]
Swissprot	tr\|P42158\|KC1D_ARATH	0	Casein kinase I isoform delta-like
trEMBL	tr\|V7C917\|V7C917_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26629.1}

Sequence

Transcript Sequence

>Glyur000953s00031165.2
CTCGTTCTCGCCCCTCCCTCCACGCACCAAAATAACCGTCGGTTACAAGAATGTTCTTGCTTCCCCCTCCATCAAATCATAACCATCACCATTACCATAATGCATGAGAAAGAAAAATCACCTTTCCAATNACTCTTCTCTTTCGCACCCTCCAATTTCATTTTCATTTTAACCTAACCTACCTACATCTCACACCCAACAAAATTATCTTCATTCTTATTCTTATTTTTTGTGTTTTTCTTTTTTTCATATATTCTTCTATTCAGAACTTCTTTTTCTTTTTTGTTTTTTTATCCGATCGATGAACACGGCTTCTTGGTAATGGATGCCTTTTCGGCATTAAATGCTTAATTCTTTTGGAATTAGGCGTTGGGAATTAGCTTAGGGTTTTCAATTTTTTTTTCATTTTCTNTTTTTCTTTTGAATGGAACCTCGCGTTGGGAATAAGTTTCGGCTTGGCCGGAAGATCGGTAGCGGCTCGTTTGGGGAGATCTATTTAGGTACTAATATTCAAACTAATGAAGAGGTTGCAATTAAGCTTGAAAATATCAAGACAAAGCATCCTCAATTGCTATATGAGTCCAAATTGTACAGAATACTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGTGTGGACGGAGATTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTTTGTAGTAGAAAGCTCTCGCTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTAGAGTTTGTTCATTCTAAATCATTTCTACATCGGGATATTAAACCGGATAATTTCCTCATGGGCTTGGGAAGGAGGGCAAACCAGGTTTACTGTATTGATTTTGGTTTAGCAAAGAAATATAGAGATAGTTCAACCCATCAACACATTCCTTACAGGTACGAGGATTCAGTTGGTTTGCAGGAATATGTTATTAGTAATCTAGGCTATTCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00953	9049	28088	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02218	CSNK1, CKI	EC:2.7.11.1	MAPK signaling pathway - yeast	map04011
			MAPK signaling pathway - yeast	map04011
			Hippo signaling pathway - multiple species	map04392
			Hippo signaling pathway - multiple species	map04392

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000953s00031165.2	PF00069.20	Pkinase	9	163	5.60E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.893
SRR1783600	control	45.308
SRR1783602	moderate drought stress	35.198
SRR1811619	moderate drought stress	35.267

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.438
DRR006520	Root Summer glycyrrhizin high producing strain	32.653
DRR006521	Root Winter glycyrrhizin high producing strain	33.694
DRR006522	Root Winter glycyrrhizin high producing strain	33.497
DRR006523	Root Summer glycyrrhizin low producing strain	28.002
DRR006524	Root Summer glycyrrhizin low producing strain	28.090
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.491
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.319

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.688
SRR2868004	Drought Stress (root)	32.407
SRR2967015	Control (root)	30.175

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.079
SRR9715740	Leaf	43.990
SRR9715741	Leaf	44.442
SRR9715739	Root	12.230
SRR9715742	Root	26.350
SRR9715743	Root	23.062

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.124
SRR8749028	MeJA induced 9h	44.747
SRR8749029	MeJA induced 9h	47.114
SRR8749030	Uninduced	42.276
SRR8749031	Uninduced	71.712
SRR8749032	Uninduced	61.302

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.942
SRR8400027	Control - Root	47.748