Gene detail

Gene detail information of Glyur000952s00025640

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13750.1	0	beta galactosidase 1
NR	XP_003550633.1	0	PREDICTED: beta-galactosidase-like [Glycine max]
COG	YP_008089223.1	2.00E-42	Beta-galactosidase [Chthonomonas calidirosea T49]
Swissprot	tr\|P48980\|BGAL_SOLLC	0	Beta-galactosidase (Precursor)
trEMBL	tr\|I1MSH3\|I1MSH3_SOYBN	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000952s00025640.1
GCTCTAGCTACCAGCTACTTTGGTTTTTCAAATGTNTATATAAAGCAGTTGCAGCCTTCTCACCAGTTGCATTAAGCTACCCATCAAGACCGCACCCTTCAACTAACTACTACCATAGTTAATAAATCGAAGTCTTTAAGCCATCTCTTTTCAATCTCAAAAGAATAAAAAAAAAAAAGGCATTGTGAACTGAAGAAACAAAAGTAGAGAAGCCCATTTTCTCTTCTTCTCTTGTGAAGTTTTTTAAATGTGTGGAGCATACAAAAGTTCACGGCTTTGAGAAAAACTGTCACGGGTTCTAATGGAGAATTTACAGAGGAAAAAATTCTTTACCCTTCTGTTGTTTTTGTGGGTCTGTGCAGTCACAGCCTCAGTGACTTATGATCACAAGGCCATTCTCGTTAGTGGGCAGAGAAAAATTTTGATCTCTGGGTCCATTCATTATCCAAGAAGTACACCACAGATGTGGCCAGAACTTATTCAAAAGGCCAAAGATGGAGGTTTAGATGTTATACAAACCTATGTGTTTTGGAATGGACACGAGCCTTCTCCTGGAGAGTATTATTTCGAGGATAGGTATGACTTGGTTAAGTTCATAAAGCTGGTGCAGCAAGCTGGCCTTTATGTTCATCTCCGCATTGGTCCCTACATTTGTGCTGAATGGAACTTTGGGGGATTTCCTGTTTGGCTCAAGTATGTTCCTGGTATTGCTTTCAGAACAGACAATGGGCCTTTCAAGGCAGCAATGCAAAAATTTACTATGAAGATTGTCAATATGATGAAGGCAGAGAAATTGTTTCAGACGCAGGGAGAGAACGAGTTTGGACCAGTGGAGTGGGAAATTGGTGCTCCTGGAAAAGCCTACACGAAATGGGCTGCTCAAATGGCTGTAGGTTTAGATACTGGCGTCCCCTGGATTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGGGTTCTACTGTGAAAACTTCACTCCCAACAAGAACTACAAACCCAAAATGTGGACAGAGAACTGGACTGGCTGGTACACAGAGTTTGGTGGTGCAGTCCCTCGTAGACCAGCAGAAGACTTGGCATTCTCAGTTGCGAGATTCATTCAGAATGGTGGCTCATTTGTTAACTACTATATGTATCATGGAGGAACTAACTTTGACCGAACATCTGGTGGCCCCTTCATTGCCACAAGCTATGACTANGATGCTCCCATTGATGAATACGGACTTCTGAACGAACCAAAATGGGGGCATTTGAGAGATTTGCACAAGGCAATAAAGCTATGTGAGCCAGCTTTAGTGTCTGTAGATCCCACGGTAACATGGCCTGGAAAAAATTTGGAGGTACATGTGTTCAAGCCAAAAACTGGTGCTTGTGCTGCATTCCTTGCAAATTATGACACCAAATCTTCAGCAACAGTTAAATTTGGAAATGGACAATATGGCCTACCACCTTGGTCTATCAGCATTCTACCTGACTGCAAAACTGCAGTTTTCAACACTGCAAGGCTTGGTGCTCAAAGCTCCCAGATGAAGATGACTGCTGCAAACAGTGCATTTGCTTGGCAATCATACAATGAAGAACCTGCATCGTCCAGTGTAGATGATTACATAACAGCATATGCACTATGGGAGCAGATTAATGTCACCCGAGATTCTACCGATTATTTGTGGTATATGACAGATGTCAACATTAATCCGAATGAAGGTTTTATAAAGAATGGACAATCTCCCCTCCTTACCGTAATGTCAGCAGGCCATGCTTTGCATGTTTTCATTAATGGTCAACTTTCAGGAACTGTGTATGGGGGATTGGAGTTTCCTAAATTAACATTTAGTGACAATGTTAAGCTGAGGGTTGGAAATAACAAGATTTCTTTACTTAGTATTGCCGTGGGACTCCCGAATGTTGGTGTGCACTTTGAGACATGGAATGCTGGGGTGTTAGGCCCAGTCACACTTAAGGGTCTAAATGAGGGGACCAGAGACTTGTCTCGACAGAAATGGTCTTACAAGATTGGACTCAAGGGTGAAGCCATGAAACTTAACACTGCAAGTGGGAGTACCTCCGTTGAATGGGTACAAGGATCATTATTGGCTAAGAAACAACCTTTGACATGGTACAAGACTACTTTTAGAACACCAGCAGGCAATGATCCATTGGCTCTAGACATGAGTACTATGGGAAAGGGTCAAGTATGGATAAATGGTCGCAGCATTGGACGCCATTGGCCTGGATACATAGCACATGGTAATTGTGGGGATTGTTATTATGCTGGAACTTACACTGATAAAAAATGCAGAACAAATTGTGGAGAGCCCTCCCAGAAATGGTACCATGTTCCTCGGTCGTGGCTGAACCCGAGTGGGAACTATCTGGTTGTGTTTGAGGAATGGGGAGGTGATCCTTCTGGAATTTCTTTGGTGAAAAGAACAACAGCAAGTGTGTGTGCTGATATATATGAAGGGCAGCCAACTCTAAGGAACCGGCAGATGCTAGAGTCTGGAAAAGTTAGTAGGCCCAAAGCTCATCTGTGGTGTCCCCCTGGGCAAAAGATCTCCCAGATTAAATTTGCTAGCTATGGATTGCCACAGGGAACCTGTGGAAACTTTAGAGAGGGGAGTTGTCATGCTCACAAATCATATGATGCTCCTGAAAGGAACTGCATTGGCAAGCAATCTTGCATGGTAACCGTAGCTCCTGAAGTTTTTGGGGGAGACCCATGTCCAGGAATTGCAAAGAAGCTCTCAGTTGAGGCCCTATGCAGCTAGGAATAGGATCATGTGTTGCAACAATTTGTCAAATAAATGTGGAGCGAATTTTTTAGGTTCGGTATAGAAAGTATTTGAAGTCCAATAACAGTGCCCTATCACTTCAGGCACTTAAATTTTACTTCCCCACAGATTGCAAAAGGCCCAATCATGCACCGGCTGACCCAAAACAAATGTAGATAAAAGAAACTGGCTGCAAATGCTGTGTACAGAGACCATACATTACACTATTACAGAGCTTTTAACAATGAAGTATTGAGCCCCTCATACACATTTCTATAGAGATTTGGAGACGACATGACAAGGGTGTCACACCATTATTCCACCAGAAAGCAATTTCTTTNTTTTTCTATTAAATTTTTTATAAGGACAAGTTGGAAGAAATAAATAGTTGATTCCAAGTGGCATTTGGAATATCCATCCCATTCCCTAGCAGAATTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00952	85520	91653	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000952s00025640.1	PF01301.14	Glyco_hydro_35	32	328	1.70E-104
Glyur000952s00025640.1	PF02140.13	Gal_Lectin	748	825	3.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.208
SRR1783600	control	1.232
SRR1783602	moderate drought stress	1.133
SRR1811619	moderate drought stress	1.139

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.932
DRR006520	Root Summer glycyrrhizin high producing strain	2.958
DRR006521	Root Winter glycyrrhizin high producing strain	0.069
DRR006522	Root Winter glycyrrhizin high producing strain	0.067
DRR006523	Root Summer glycyrrhizin low producing strain	1.027
DRR006524	Root Summer glycyrrhizin low producing strain	0.972
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.920
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.125

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.699
SRR2868004	Drought Stress (root)	10.620
SRR2967015	Control (root)	16.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.909
SRR9715740	Leaf	15.148
SRR9715741	Leaf	17.290
SRR9715739	Root	1.123
SRR9715742	Root	3.093
SRR9715743	Root	2.911

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.309
SRR8749028	MeJA induced 9h	8.721
SRR8749029	MeJA induced 9h	7.450
SRR8749030	Uninduced	7.676
SRR8749031	Uninduced	4.642
SRR8749032	Uninduced	3.206

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.645
SRR8400027	Control - Root	7.989